PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019194439.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 371aa    MW: 40028.7 Da    PI: 6.5129
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019194439.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.92.4e-13114158347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + ++lG+g+W+ I+r   + Rt+ q+ s+ qky
   XP_019194439.1 114 PWTEEEHRLFLLGLQKLGKGDWRGISRNYVTSRTPTQVASHAQKY 158
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    
MPRRCSHCSN NGHNSRTCPA RGGAAAGGGG GVGVKLFGVR LTDGGSIMKK SASMGNLSAL  60
YHSSSSAAAS PNPGSPSSDA FREPVHLSDG YASDDPTHAS CSTNRRAERK KGVPWTEEEH  120
RLFLLGLQKL GKGDWRGISR NYVTSRTPTQ VASHAQKYFI RQSNVTRRKR RSSLFDMVAD  180
MATESRPFPE EQFMLPPRAL ETDEAEAEAE TEAVETDRAH SLPSLQLSLK PGFESMETTP  240
SEPVENTEEN VTPSLEAPRV FPTFIPTYIP ISFPLWSSNA VPLDEDTGGD TSHHQILKPI  300
PVVPKELVNV DELVGMSQLS LGESISCQIE PSPLSLKLTG EPSRQSAFHA STPVHSSSEI  360
VKGEASPLKA V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.18e-80MYB_related family protein