PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019194463.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 221aa MW: 23847 Da PI: 6.751

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019194463.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.1	1.1e-41	52	151	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaC++lrr+C++ Cvlapyfp ++p kf ++h++FGasn++k+l++l e++r da++s+vyeA ar+rdPvyG++g i +lq+q+++l+aela XP_019194463.1 52 PCAACRILRRRCVDRCVLAPYFPPTDPLKFTIAHRVFGASNIIKMLQELAEDQRADAVNSMVYEAGARIRDPVYGCAGAICQLQKQMSELQAELA 146 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_019194463.1 147 KAQAE 151 *9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence
MGYSTDKRTT TTTSHLTSSP SSPSSSAVSG GGCVGSPASP APPSPPPVIL TPCAACRILR 60 RRCVDRCVLA PYFPPTDPLK FTIAHRVFGA SNIIKMLQEL AEDQRADAVN SMVYEAGARI 120 RDPVYGCAGA ICQLQKQMSE LQAELAKAQA EILNLQCQNT NLKTLVCMQM ASSSSQQQQR 180 HHHDNLSSPV QEHLSSYESG SSFLLEDCSF SSDILEPMLW G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	6e-59	LBD family protein