PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019194567.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 362aa MW: 38977.1 Da PI: 6.7709

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019194567.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.6	1.3e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l++++ +G g+W++++r g+ R++k+c++rw +yl XP_019194567.1 14 RGLWSPEEDEKLINYISTYGHGCWSSVPRLAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP
2	Myb_DNA-binding	45.7	1.5e-14	67	109	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+++++E l+++++ lG++ W+ Ia++++ gRt++++k++w+ XP_019194567.1 67 RGSFSPQEAALIIELHLILGNR-WAQIAKYLP-GRTDNEVKNFWN 109 899*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MGHHSCCNKQ KVKRGLWSPE EDEKLINYIS TYGHGCWSSV PRLAGLQRCG KSCRLRWINY 60 LRPDLKRGSF SPQEAALIIE LHLILGNRWA QIAKYLPGRT DNEVKNFWNS SIKKKIISRA 120 CFSDHLSAII SSNIPADPNT APFDHQTLFS LNPSYNNNVI LDQAGIISAG TSSSSPSSFL 180 QAAQMMDQNG NLVLPVMPSA PPPSDPAAAA WFLGQQPQNL EHNYSIFSAA ANNDHIAPPD 240 FDMMLFPAMP KLCEMIKAGG DAGENMPIAS SSSSSSSSAV VAAAAHGGDL VFPASSLPCY 300 PSGCNARDLQ VAAGYEMEQT DTIILPSFPL PPPPSSLSPP LSLSPVSYSG QSGNQLIITY 360 QS

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MGHHSCCNKQ KVKRGLWSPE EDEKLINYIS TYGHGCWSSV PRLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SPQEAALIIE LHLILGNRWA QIAKYLPGRT DNEVKNFWNS SIKKKIISRA  120
CFSDHLSAII SSNIPADPNT APFDHQTLFS LNPSYNNNVI LDQAGIISAG TSSSSPSSFL  180
QAAQMMDQNG NLVLPVMPSA PPPSDPAAAA WFLGQQPQNL EHNYSIFSAA ANNDHIAPPD  240
FDMMLFPAMP KLCEMIKAGG DAGENMPIAS SSSSSSSSAV VAAAAHGGDL VFPASSLPCY  300
PSGCNARDLQ VAAGYEMEQT DTIILPSFPL PPPPSSLSPP LSLSPVSYSG QSGNQLIITY  360
QS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13890.2	6e-70	MYB family protein