PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019194602.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 803aa MW: 92204.3 Da PI: 6.9003

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019194602.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	43.6	9.7e-14	75	129	37	91
FAR1 37 kegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +e r +k++++k+ ++r+ +t+Cka +++k+++dgkw+++++++eHnHe++p XP_019194602.1 75 REYARFGTKRDSDKAVNSRSCPKTDCKAGMHIKRKQDGKWHIYSFVKEHNHEICP 129 44444444555668999***********************************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 803 aa Download sequence
MEIDLELPSR VDEKLDSVTA TTDANAVLEE GENVDGVGDF MDGDSISLAG KGMISYEPRK 60 DLEFETKEAA YSFYREYARF GTKRDSDKAV NSRSCPKTDC KAGMHIKRKQ DGKWHIYSFV 120 KEHNHEICPD DFYYAIRGRI KQSINAQHQK KALQLALDGE DIQAMLDSFM LMQGETPGFY 180 YAVDFDKERR MRNVCWVDAK GRHDYGYFSD VIFFDTTYIR KKYKVPLLPI VGVNHNFQLL 240 LLGCGLIGDE TSSNYIWLMR TWLRAVGGQS PKVVITNDNN SLQEAIDDVF PNARHCFCLW 300 HVMEKISHHL SHKMHNFEVF LRKFNKCVYQ PWSEECFEKR WSDKIVDAFE LRGEECMGFL 360 FESRKKWVPA YMRGTFLGGL CTVERSEGIS SFFDNYIHKE TTFKEFIDHY KTFLHDCYEE 420 ETKADFETKY KQPTIKSVFP YEKQMSTVYT HAVFKKFQSE VHGMGSCDVQ KEGEDGKTML 480 YRVDDSEKQQ KFIVAWIERQ SNVYCSCHSF EYRGFLCRHA MKVLQIYGMS SIPPQYVLKR 540 WTREAKIRET TSRLPSSPHY RVQRLNDLCK LAVKLGEAGS LSLESYNIVL YALEEAMEHC 600 VGENNSARSS LENNILSTQN LPCIDIEKQG SGTAKRLKKK QLPKKHKVQS VTEEISSGVQ 660 DSNQQESSNP REQTLESSYV AFLDMQGMEL GSRTPVTDGY YSTQQSIQGL GQLASLPMLR 720 EGYYYNQGMQ GILQGNLNSI ATRLSHYPIQ SFQGMLQGQL GFRAAASMHG GFEIQDGLLD 780 MGNSINSAGK QDKHFSSRDC RAQ

Sequence ? help Back to Top

Protein Sequence Length: 803 aa Download sequence

MEIDLELPSR VDEKLDSVTA TTDANAVLEE GENVDGVGDF MDGDSISLAG KGMISYEPRK  60
DLEFETKEAA YSFYREYARF GTKRDSDKAV NSRSCPKTDC KAGMHIKRKQ DGKWHIYSFV  120
KEHNHEICPD DFYYAIRGRI KQSINAQHQK KALQLALDGE DIQAMLDSFM LMQGETPGFY  180
YAVDFDKERR MRNVCWVDAK GRHDYGYFSD VIFFDTTYIR KKYKVPLLPI VGVNHNFQLL  240
LLGCGLIGDE TSSNYIWLMR TWLRAVGGQS PKVVITNDNN SLQEAIDDVF PNARHCFCLW  300
HVMEKISHHL SHKMHNFEVF LRKFNKCVYQ PWSEECFEKR WSDKIVDAFE LRGEECMGFL  360
FESRKKWVPA YMRGTFLGGL CTVERSEGIS SFFDNYIHKE TTFKEFIDHY KTFLHDCYEE  420
ETKADFETKY KQPTIKSVFP YEKQMSTVYT HAVFKKFQSE VHGMGSCDVQ KEGEDGKTML  480
YRVDDSEKQQ KFIVAWIERQ SNVYCSCHSF EYRGFLCRHA MKVLQIYGMS SIPPQYVLKR  540
WTREAKIRET TSRLPSSPHY RVQRLNDLCK LAVKLGEAGS LSLESYNIVL YALEEAMEHC  600
VGENNSARSS LENNILSTQN LPCIDIEKQG SGTAKRLKKK QLPKKHKVQS VTEEISSGVQ  660
DSNQQESSNP REQTLESSYV AFLDMQGMEL GSRTPVTDGY YSTQQSIQGL GQLASLPMLR  720
EGYYYNQGMQ GILQGNLNSI ATRLSHYPIQ SFQGMLQGQL GFRAAASMHG GFEIQDGLLD  780
MGNSINSAGK QDKHFSSRDC RAQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.3	0.0	FAR1 family protein