PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019194643.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Trihelix

Protein Properties

Length: 358aa MW: 39156.7 Da PI: 8.4566

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019194643.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	44.6	3.8e-14	95	186	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +W++ +++Lie + +l+rg+l+ ++W ev++++ + ++ r+ +qCk++++ l+k+yk ++++ ++ + +s++++f++l+a XP_019194643.1 95 CWSEAATHTLIESWGSHYLELNRGNLRRQHWMEVADAVnalhgHTKKQYRTDIQCKNRIDTLKKKYKTERARVSQSPGNYVSSWAFFNSLDA 186 7***********************************999987778889********************99899999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence
MSCQPITNTN TFSPPNSFSN PNSSTTAGAA VDDESPISKA MSDDELEATP TSNNSHSPSP 60 APLSPATNEL AVVPLSSNAP PPASRTPVFP AREDCWSEAA THTLIESWGS HYLELNRGNL 120 RRQHWMEVAD AVNALHGHTK KQYRTDIQCK NRIDTLKKKY KTERARVSQS PGNYVSSWAF 180 FNSLDALIGD NFKPSSSPAT TAPNRKTPPA LPPPPSAVPV GPRSKRPVAI DETVSRRNFS 240 AMAAAAAAAA TEDSDENEES ETSSPPPAPA FSGGNKRKDV GAQLEGFRSL AEAIGKFSDI 300 YKRVEEAKLR QMVDLEKQRM QFAKDLELQR MKLIMESQVQ LEKLKRAKRN NSHADNYL

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence

MSCQPITNTN TFSPPNSFSN PNSSTTAGAA VDDESPISKA MSDDELEATP TSNNSHSPSP  60
APLSPATNEL AVVPLSSNAP PPASRTPVFP AREDCWSEAA THTLIESWGS HYLELNRGNL  120
RRQHWMEVAD AVNALHGHTK KQYRTDIQCK NRIDTLKKKY KTERARVSQS PGNYVSSWAF  180
FNSLDALIGD NFKPSSSPAT TAPNRKTPPA LPPPPSAVPV GPRSKRPVAI DETVSRRNFS  240
AMAAAAAAAA TEDSDENEES ETSSPPPAPA FSGGNKRKDV GAQLEGFRSL AEAIGKFSDI  300
YKRVEEAKLR QMVDLEKQRM QFAKDLELQR MKLIMESQVQ LEKLKRAKRN NSHADNYL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	3e-44	Trihelix family protein