PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019194859.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 206aa    MW: 22610.4 Da    PI: 4.776
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019194859.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260134.24.9e-42361351100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+Ca++Cvlapyfp ++p kf  +h++FGasn++k+l++lpe +r da+ss+vyeA+ar+rdPvyG++g i +lq+q++ l+a+la
  XP_019194859.1  36 PCAACKILRRRCAEKCVLAPYFPPNDPIKFTTAHRVFGASNIIKFLQELPECQRADAVSSMVYEANARLRDPVYGCAGAIDQLQKQVNMLQAQLA 130
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_019194859.1 131 KAQAE 135
                     99976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    
MESSDTTNSP ASSRSVSPSS SPPSPTTPLP VVVMSPCAAC KILRRRCAEK CVLAPYFPPN  60
DPIKFTTAHR VFGASNIIKF LQELPECQRA DAVSSMVYEA NARLRDPVYG CAGAIDQLQK  120
QVNMLQAQLA KAQAEVVNMQ CQHANVMALY YEMARSSSPQ ASPPQQYSFD DFSGRNGFGS  180
GYCDYIDEEN SLDSFWDQLN TLDMSV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.16e-66LBD family protein