PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019194883.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 398aa MW: 44998.3 Da PI: 8.9009

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019194883.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.4	2.8e-19	64	164	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 +fYn+YA +v F++r s+ + r+g+ t+++ vC++eg++++ ++ ++ +r+r+++rtgC+a++ k + ++vt++ + XP_019194883.1 64 EFYNHYAAKVRFDTRSSSVVTA-RDGTKTQKQIVCNREGFKNTGAQHchsisnadagegPSRPKRRRVSNRTGCRARIIFKYIGVAGYQVTTFIE 157 6************9998887.8888************99999*****99899999************************** PP FAR1 84 eHnHela 90 +HnH+++ XP_019194883.1 158 KHNHSMS 164 **985 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence
MEEFDQVPSE IQSTNNPSLS PSSSSNGYTL TISPGMTQYW TPHCEDEMKP AVNMIFKTLD 60 ACIEFYNHYA AKVRFDTRSS SVVTARDGTK TQKQIVCNRE GFKNTGAQHC HSISNADAGE 120 GPSRPKRRRV SNRTGCRARI IFKYIGVAGY QVTTFIEKHN HSMSLVLARQ FLKGNGNISS 180 VHQKFILDCA KANIGASKSK GLYSHIVGDY SEVGATVVDF KNVRRDLRAY ILGADAQILV 240 HNLIKKQEMC PAFAFDYEVD EDEQMSRLFW TDPMSKKNFA AFGDVVSFDA TYSTNRYNLV 300 FTPFTGVDNH KNCITFGAGL LLKEDIESYV WLFEKFKKAM GMEPRIIVTD QDPAMKVAIL 360 TVFKQARHRY CMWHIMCKVG EKVGPTLNKN EEFKNKLN

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence

MEEFDQVPSE IQSTNNPSLS PSSSSNGYTL TISPGMTQYW TPHCEDEMKP AVNMIFKTLD  60
ACIEFYNHYA AKVRFDTRSS SVVTARDGTK TQKQIVCNRE GFKNTGAQHC HSISNADAGE  120
GPSRPKRRRV SNRTGCRARI IFKYIGVAGY QVTTFIEKHN HSMSLVLARQ FLKGNGNISS  180
VHQKFILDCA KANIGASKSK GLYSHIVGDY SEVGATVVDF KNVRRDLRAY ILGADAQILV  240
HNLIKKQEMC PAFAFDYEVD EDEQMSRLFW TDPMSKKNFA AFGDVVSFDA TYSTNRYNLV  300
FTPFTGVDNH KNCITFGAGL LLKEDIESYV WLFEKFKKAM GMEPRIIVTD QDPAMKVAIL  360
TVFKQARHRY CMWHIMCKVG EKVGPTLNKN EEFKNKLN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	126	130	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-56	FAR1 family protein