PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019194956.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 392aa MW: 42240.2 Da PI: 7.6458

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019194956.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.6	3e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++q+G g+W++ +++ g+ R++k+c++rw +yl XP_019194956.1 14 KGPWTPEEDQKLLAYIEQHGHGSWRALPSKAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	52.9	8.8e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l XP_019194956.1 67 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence
MGRSPCCDKV GLKKGPWTPE EDQKLLAYIE QHGHGSWRAL PSKAGLQRCG KSCRLRWTNY 60 LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLAKMG 120 IDPVTHKPKN DALLSSDGQS KSAANLSHMA QWESARLEAE ARLVRQSKLR SVSLQNPLEP 180 SSPLNKPVVP PAAGSPRCLD ILKAWGGGGG AGGSSGAFSV VGLGVGEPQL ESPTSTLSYS 240 ENAPQISSTG AGMGEHSTAA FMKEETEDQA WKCFGNAAEH FKHGGGVEDS TAAAGFASSG 300 LLGLTSMPAV AMESAAWTTQ EHIPTGNFVE RFTDLLLSAN STERSLSEAG STESNNAGDG 360 ASGNHHYYED NKNYWDSILN LVNSSPTNSP MF

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence

MGRSPCCDKV GLKKGPWTPE EDQKLLAYIE QHGHGSWRAL PSKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLAKMG  120
IDPVTHKPKN DALLSSDGQS KSAANLSHMA QWESARLEAE ARLVRQSKLR SVSLQNPLEP  180
SSPLNKPVVP PAAGSPRCLD ILKAWGGGGG AGGSSGAFSV VGLGVGEPQL ESPTSTLSYS  240
ENAPQISSTG AGMGEHSTAA FMKEETEDQA WKCFGNAAEH FKHGGGVEDS TAAAGFASSG  300
LLGLTSMPAV AMESAAWTTQ EHIPTGNFVE RFTDLLLSAN STERSLSEAG STESNNAGDG  360
ASGNHHYYED NKNYWDSILN LVNSSPTNSP MF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	1e-129	MYB family protein