PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019194995.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 294aa    MW: 33396.4 Da    PI: 6.5143
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019194995.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.32.1e-141562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W+++Ed++l + + ++G g+W++++   g+ R +k+c++rw +yl
   XP_019194995.1 15 KGLWSPDEDQKLRNHILKHGHGCWSSVPINAGLQRNGKSCRLRWINYL 62
                     678*******************************************97 PP
2Myb_DNA-binding49.11.3e-1568113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++ +E+e ++ ++  lG++ W+ Ia++++ gRt++++k++w++yl
   XP_019194995.1  68 RGTFSLQEEEAILALHGILGNK-WSQIAQHLP-GRTDNEIKNFWHSYL 113
                      899*******************.*********.************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    
MGEKPMDKPK QKHKKGLWSP DEDQKLRNHI LKHGHGCWSS VPINAGLQRN GKSCRLRWIN  60
YLRPGLKRGT FSLQEEEAIL ALHGILGNKW SQIAQHLPGR TDNEIKNFWH SYLKKKVSKM  120
AEAERSMENG ECSVHSVKST SQSSGLDSFG QMEGSLADTD ESIPNNLDFP KTAQKSNLPK  180
VLFAEWLSLD QFNGQDNFQT ANHAVLPRNN FGYNGSELQD PFMHGLLLNE ETYGNGIQPV  240
LNNATVDDMF QPELKFEDQI TVSGFAEFFS GGFNVSSNDI MYDELYLRRN FREE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48920.17e-56MYB family protein