PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019195382.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 219aa    MW: 23482.9 Da    PI: 7.9795
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019195382.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.21.4e-292104198
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C++ C+l+p++     +++q +++ +v+k+FG++ +l++++a+pe++r+ +++sl+yeA  r+ +Pv+Gavg++ +++++++q+
  XP_019195382.1   2 SCNGCRVLRKGCSDTCILRPCLhwiqsADAQGNATIFVAKFFGRAGLLSFISAVPENQRPSLFQSLLYEAAGRTVNPVNGAVGLLGSGNWHVCQA 96 
                     6*********************9998666778*************************************************************** PP

          DUF260  91 kaelallk 98 
                     ++e++l++
  XP_019195382.1  97 AVETVLRG 104
                     **998876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MSCNGCRVLR KGCSDTCILR PCLHWIQSAD AQGNATIFVA KFFGRAGLLS FISAVPENQR  60
PSLFQSLLYE AAGRTVNPVN GAVGLLGSGN WHVCQAAVET VLRGGELRPI PEFLGGSDCT  120
DDMFKLQDPP SIIRRSTVQK RSTLPDGSSR GLKVGDLDLS LTPGFQASIP MTGNTPLPGK  180
QRWPPRTLSM NSEESITCFE GGFGIGDQGG VEPKLLNLF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.16e-71LBD family protein