PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019195591.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 256aa MW: 28670.5 Da PI: 7.4964

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019195591.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56	9.3e-18	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ +++q+G+g +W t ++++g++R++k+c++rw++yl XP_019195591.1 14 KGPWSPEEDAKLKSYIQQHGTGgNWITLPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	40.4	6.6e-13	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ XP_019195591.1 69 GEFTEEEDNIICTLYITIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 78*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDAKLKSYIQ QHGTGGNWIT LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGE FTEEEDNIIC TLYITIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGT 120 KLQPPPPPLP FPPPADLYSL PQQTVPLPTH YSHIHNQPPL SSLSCSSTKF HCPADDLQPH 180 EENPIIAAAN TAFSSASIFS MAATNNSQGF NSFPIDLADD NLFYGYDQTQ ESYSYSMDLH 240 QEMAPPNILQ GPTYLI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	8e-76	MYB family protein