PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019195608.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 337aa MW: 36993 Da PI: 6.7913

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019195608.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.2	1.4e-13	155	201	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + h ++ErrRR+++ ++f L +l+P + kKl+Ka++L A+++Ik+L XP_019195608.1 155 QDHVMAERRRREKLTQCFVALSSLVPGL-----KKLDKASVLGAAIKHIKDL 201 6799**********************.....9**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence
MDNLSSAEWF SQEMDEWQMM NTFDDFAVFS PEMMPFPSSA GYCSSPFPPF SSSNGFQTVA 60 GAHVVENPAA AVNRVQENPS LSSSSSSIIS FANSDLPWAT QHLPNNSNNP KALVKTEMVF 120 TSRSCVVADG RKDMIGFSGA ADVKKGAARN AVQAQDHVMA ERRRREKLTQ CFVALSSLVP 180 GLKKLDKASV LGAAIKHIKD LKERVETLEE NAKRHAEEPP AAAAAVKRVR LSGSDDDSYS 240 SDENSDASTE MSLPEIEVRS SDQNMLIRVH CKKHNRVIKE IFSEIEKMQL SILSSSVMPF 300 GKTTTHITII AQMDHKFCMA AKDVASTIRM TILKLLG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	161	166	ERRRRE
2	162	167	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	3e-44	bHLH family protein