PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019195613.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 227aa    MW: 26094.2 Da    PI: 6.1758
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019195613.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.93.4e-183484656
                    S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +f++eq++ Le++F  + ++ a+++ +LA+ lgL+ rqV +WFqN+Ra++k
  XP_019195613.1 34 RFSHEQVKLLESMFTLETKLEAHKKLQLARDLGLQPRQVGIWFQNKRARWK 84
                    69************************************************9 PP
2HD-ZIP_I/II112.82.2e-3632122393
     HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      +r+s+eqvklLE++F+ e+kLe ++K +lar+Lglqprqv +WFqn+RAR+k+kq+E+dy+ Lk+++d+l+ + + L++e+++L  +l++
  XP_019195613.1  32 CKRFSHEQVKLLESMFTLETKLEAHKKLQLARDLGLQPRQVGIWFQNKRARWKAKQIEQDYRELKAKFDNLNVQFDYLKNENQSLLMQLEK 122
                     58***********************************************************************************999986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MEGGDHHQYP GPEDHEPVRC QQPSSKKKGE NCKRFSHEQV KLLESMFTLE TKLEAHKKLQ  60
LARDLGLQPR QVGIWFQNKR ARWKAKQIEQ DYRELKAKFD NLNVQFDYLK NENQSLLMQL  120
EKLRSEVENK PAGHRKIQDS KGSKVFRDSD SKDANFGTKE NPEIKRGEDA NELGINEYLE  180
QQEEEAEFLN LGGLGGDSPL SSQENWCCIG LGDAFCHSCG TSKLWDI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.11e-34HD-ZIP family protein