PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019195685.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 690aa MW: 78082.5 Da PI: 7.6983

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019195685.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.8	5.5e-21	57	141	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yn+YA+++GFsvrk +++++ +++i +++f+Csk g+++++ k ++ trtgC a ++ +dg w vtk e+ HnHel+ XP_019195685.1 57 VYNSYAYTLGFSVRKGHQRYKGSSNTIQMKKFCCSKAGYKANSGVK----AYSKIDTRTGCGAFVQFDVGDDGLWTVTKHEKVHNHELC 141 7******************99999***********99877....8999*******************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 690 aa Download sequence
MEDGTEQTNS AVDDWHSIQV SEGIVDGSVD VDGSSSITVD QDLVGLVVSN ADEAFEVYNS 60 YAYTLGFSVR KGHQRYKGSS NTIQMKKFCC SKAGYKANSG VKAYSKIDTR TGCGAFVQFD 120 VGDDGLWTVT KHEKVHNHEL CVFNKSHLLR SHRSVGDNQL LYLQGLKDSG VALADGIRRR 180 QSTETDFFFD FELDLDARLC SFFWRDGQMR RDYEVFGDLL VHDTTYRTNK YDMICAPFVG 240 MNHHCMNVMF GCGFLMNERI ESFVWLFKVF SRSMGGKSPQ TIMTDQCAAM AAAISKVFPT 300 SRHRLCIWHI ETEAEFQFYW TRLVTNYKCH KNTWLEKLYD CREKWCPAFN KDYFSGGILS 360 SQRSETTNHS ISRRLSKTAG LCDFYSSFVS VISEWRSKEN GEDFRCAQGV PAMMMEHVKL 420 LSHAREVYTI EIYFLFEEQF MKGSACHQEM VLNDGRQQKY HVWRPDIDII RHEVSFNAAN 480 LDISCSCKLM SELGILCCHC IRILHVHCVS SIPDKYILKR WTKKVIDGRN VNIDSMVYNV 540 GVPPSIWVFD ISRKFQRLAV SSQDSSVARK LCDEAVDDVK KKVEAEVGHV HIEECGVSSS 600 SGGVQNPSSR RLKGERNKRR SGVIEKKYSL ARGRRSAANK AALSTKGAVQ SLVLENISKL 660 AGDGYLVHPS SSSSDFVQFS KGLDDNVGVD

Sequence ? help Back to Top

Protein Sequence Length: 690 aa Download sequence

MEDGTEQTNS AVDDWHSIQV SEGIVDGSVD VDGSSSITVD QDLVGLVVSN ADEAFEVYNS  60
YAYTLGFSVR KGHQRYKGSS NTIQMKKFCC SKAGYKANSG VKAYSKIDTR TGCGAFVQFD  120
VGDDGLWTVT KHEKVHNHEL CVFNKSHLLR SHRSVGDNQL LYLQGLKDSG VALADGIRRR  180
QSTETDFFFD FELDLDARLC SFFWRDGQMR RDYEVFGDLL VHDTTYRTNK YDMICAPFVG  240
MNHHCMNVMF GCGFLMNERI ESFVWLFKVF SRSMGGKSPQ TIMTDQCAAM AAAISKVFPT  300
SRHRLCIWHI ETEAEFQFYW TRLVTNYKCH KNTWLEKLYD CREKWCPAFN KDYFSGGILS  360
SQRSETTNHS ISRRLSKTAG LCDFYSSFVS VISEWRSKEN GEDFRCAQGV PAMMMEHVKL  420
LSHAREVYTI EIYFLFEEQF MKGSACHQEM VLNDGRQQKY HVWRPDIDII RHEVSFNAAN  480
LDISCSCKLM SELGILCCHC IRILHVHCVS SIPDKYILKR WTKKVIDGRN VNIDSMVYNV  540
GVPPSIWVFD ISRKFQRLAV SSQDSSVARK LCDEAVDDVK KKVEAEVGHV HIEECGVSSS  600
SGGVQNPSSR RLKGERNKRR SGVIEKKYSL ARGRRSAANK AALSTKGAVQ SLVLENISKL  660
AGDGYLVHPS SSSSDFVQFS KGLDDNVGVD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-68	FAR1 family protein