PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019195691.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 744aa MW: 84676.3 Da PI: 8.8366

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019195691.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.3	1.4e-19	35	133	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 +fY++YA+++GF+vr++++k+ r+g+it++ Cs+ g++ ++ + + ++r+r+++r+gC+a++ k+ k ++ +ev+ +e+ XP_019195691.1 35 EFYKTYATTTGFDVRRASEKTD-RQGQITSKYVLCSRAGFKLPTGEGdgvgvamvedNAPTKRRRVTNRVGCNARIIFKRAKdNNGYEVYAIEER 128 6*************998777.7888************99999***99999999**************9999****** PP FAR1 85 HnHel 89 HnH l XP_019195691.1 129 HNHLL 133 *88 PP

Sequence ? help Back to Top
Protein Sequence Length: 744 aa Download sequence
MNISPGETNY FTPECEEGKK PFVGQVFATL EGGIEFYKTY ATTTGFDVRR ASEKTDRQGQ 60 ITSKYVLCSR AGFKLPTGEG DGVGVAMVED NAPTKRRRVT NRVGCNARII FKRAKDNNGY 120 EVYAIEERHN HLLRTAISRP FMKANRKLDL GHQNFIINCA KANIGYNKSF TLYEEMVGGF 180 ANVGATVTYF GNFKRDIMAY IEGADAQLVL DKYMAKKEVS TDFYFAHDVD ELDQLCRIFW 240 ADPQARHNFK LFGDVMSFDA TYSTNRYKMV FVPFTGVDHH KKSVTFAAGL ITREDVDSYA 300 WLLEHFKNAM GKVPACTVTD QDPAMRVAIA RVFDTTRHRF CMWHIMTKVC EKVGPTLASN 360 EDFLKSLNDV VWSETQSIRE FETGWQTVME KHNLVEHKWF THLFEIRDHW IPAFFNDVFM 420 GGLIRTTSRS ESENNVFSNC TSPHFSLTQF FIQFEKAIDK QRHNQSQLNA NCEDKFPVLK 480 TPILLERQAA ATYTIAVFYD VQKEIVKACF SSQVVNKTVE GSTTTLLIED TNTVFHSVEY 540 NHIEGKAKCS CNMFQRIGLQ CRHVFLTFKD ARLERIPAQY IIPRWTRSSC WPHAQLYANP 600 ELGSPTEAIG GNTRMGTVFD EFFKCVGYAY GNTDRITELG KILKEHRERS MESVHQVEAK 660 AQKSGMIRSF CGSTSSPNIT VHPPPAIAKN KGSGKRLKSS KEIASEIAAK DVRKCRTCNK 720 YGHHDSRNCE LRSKTKKKSQ TNPA

Sequence ? help Back to Top

Protein Sequence Length: 744 aa Download sequence

MNISPGETNY FTPECEEGKK PFVGQVFATL EGGIEFYKTY ATTTGFDVRR ASEKTDRQGQ  60
ITSKYVLCSR AGFKLPTGEG DGVGVAMVED NAPTKRRRVT NRVGCNARII FKRAKDNNGY  120
EVYAIEERHN HLLRTAISRP FMKANRKLDL GHQNFIINCA KANIGYNKSF TLYEEMVGGF  180
ANVGATVTYF GNFKRDIMAY IEGADAQLVL DKYMAKKEVS TDFYFAHDVD ELDQLCRIFW  240
ADPQARHNFK LFGDVMSFDA TYSTNRYKMV FVPFTGVDHH KKSVTFAAGL ITREDVDSYA  300
WLLEHFKNAM GKVPACTVTD QDPAMRVAIA RVFDTTRHRF CMWHIMTKVC EKVGPTLASN  360
EDFLKSLNDV VWSETQSIRE FETGWQTVME KHNLVEHKWF THLFEIRDHW IPAFFNDVFM  420
GGLIRTTSRS ESENNVFSNC TSPHFSLTQF FIQFEKAIDK QRHNQSQLNA NCEDKFPVLK  480
TPILLERQAA ATYTIAVFYD VQKEIVKACF SSQVVNKTVE GSTTTLLIED TNTVFHSVEY  540
NHIEGKAKCS CNMFQRIGLQ CRHVFLTFKD ARLERIPAQY IIPRWTRSSC WPHAQLYANP  600
ELGSPTEAIG GNTRMGTVFD EFFKCVGYAY GNTDRITELG KILKEHRERS MESVHQVEAK  660
AQKSGMIRSF CGSTSSPNIT VHPPPAIAKN KGSGKRLKSS KEIASEIAAK DVRKCRTCNK  720
YGHHDSRNCE LRSKTKKKSQ TNPA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	95	99	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-87	FAR1 family protein