PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019196053.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 143aa MW: 16382.2 Da PI: 9.6311

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019196053.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.2	6.4e-05	29	51	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs++ L H++ H XP_019196053.1 29 FSCNFCKREFSTSQALGGHQNAH 51 89******************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence
MTTSSPPHSN SPNKGEPAER QDFESEIIFS CNFCKREFST SQALGGHQNA HKQERALTKR 60 RQWLLDTVPP YVNPHYHRYY HPYSTFSSHL PFYNSFGNRS LGVMPNYSSA IHRLPSSYHH 120 PSVLAENLTT LASATRSGRR DRC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80730.1	4e-18	C2H2 family protein