PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019196180.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 593aa MW: 66984.7 Da PI: 7.7926

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019196180.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.3	1.1e-22	70	168	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY+ Y++ GF+vr+s+ k+ r+g +++r +vCs++g + +k ++k+rr+r+++r+gC+akl +kk+++g+++v+k++++H XP_019196180.1 70 EFYKIYGRASGFDVRQSSVKRD-RSGDVIRRSLVCSRQGAKGGGGRKptldvrgtssSNKQRRRRVSNRVGCNAKLGLKKKSTGEFVVSKFVEDH 163 6**************99998.7788**********99999999***9999******************************* PP FAR1 86 nHela 90 nH+l+ XP_019196180.1 164 NHSLC 168 **8 PP

Sequence ? help Back to Top
Protein Sequence Length: 593 aa Download sequence
MDAHGDGHPT AGAVEHGVTG SIDGDFGTRD ATHYTPGKTN TLNQHWKPNV DTTIIPVLGQ 60 CFKSVYEGVE FYKIYGRASG FDVRQSSVKR DRSGDVIRRS LVCSRQGAKG GGGRKPTLDV 120 RGTSSSNKQR RRRVSNRVGC NAKLGLKKKS TGEFVVSKFV EDHNHSLCSE GAKLFMRGNR 180 KLNVTQHAFL EDCLKANVGP STGFRLCREV AGSFENVGAT YVEFHNFKLD LQTYVDVADG 240 EMIIERFKTK RGACDSFFFD YHLDEENRIA RLFWADPIGR RSFSCYGDVI SFDATYSTNK 300 YNLVFVPFTG VDNHKRCITF AAGLLSKEDV ESYSWLLERF NLAMGKAPLC AVTDQDPAMK 360 IAMEQVLPGC RHRFCMWHIM TKVSEKVGPG LSNNEEFRKS LNDIVWNETT STGDYEVQWQ 420 LLMEKYNLSD HRWFQKLYAE RDHWIPAFFF LDLPMSGLVR TTSRSEAQNS VYGKFTRLHS 480 SLVEFYMQTE SVLDTQRHNQ AKLDAQCEGS LPEFKTPLAL ERHAADLFTL TIFYALQKEI 540 EAACFYCEVV GIREDGGPFI TTSEEIAPPR TLYNTNRAGV LLFAAARCSN DWV

Sequence ? help Back to Top

Protein Sequence Length: 593 aa Download sequence

MDAHGDGHPT AGAVEHGVTG SIDGDFGTRD ATHYTPGKTN TLNQHWKPNV DTTIIPVLGQ  60
CFKSVYEGVE FYKIYGRASG FDVRQSSVKR DRSGDVIRRS LVCSRQGAKG GGGRKPTLDV  120
RGTSSSNKQR RRRVSNRVGC NAKLGLKKKS TGEFVVSKFV EDHNHSLCSE GAKLFMRGNR  180
KLNVTQHAFL EDCLKANVGP STGFRLCREV AGSFENVGAT YVEFHNFKLD LQTYVDVADG  240
EMIIERFKTK RGACDSFFFD YHLDEENRIA RLFWADPIGR RSFSCYGDVI SFDATYSTNK  300
YNLVFVPFTG VDNHKRCITF AAGLLSKEDV ESYSWLLERF NLAMGKAPLC AVTDQDPAMK  360
IAMEQVLPGC RHRFCMWHIM TKVSEKVGPG LSNNEEFRKS LNDIVWNETT STGDYEVQWQ  420
LLMEKYNLSD HRWFQKLYAE RDHWIPAFFF LDLPMSGLVR TTSRSEAQNS VYGKFTRLHS  480
SLVEFYMQTE SVLDTQRHNQ AKLDAQCEGS LPEFKTPLAL ERHAADLFTL TIFYALQKEI  540
EAACFYCEVV GIREDGGPFI TTSEEIAPPR TLYNTNRAGV LLFAAARCSN DWV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-77	FAR1 family protein