PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019196306.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 761aa MW: 85483.5 Da PI: 8.5454

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019196306.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.4	2.1e-22	53	153	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 +fY++YA vGF+vr s++k+ r+ge++++ +vCs++g+++ + +k ++ +r+r ++r+gCka+++ kk ++g ++v ++e XP_019196306.1 53 EFYKKYAAAVGFDVRHSSKKT-GRDGEVVSKYLVCSRQGFKAVSGQKartvegegdddgSVPVKRRRISNRVGCKARVRFKKLRTGGYQVVSFED 146 6************998666.59999***********9999999****9999999*************************** PP FAR1 84 eHnHela 90 HnH+l+ XP_019196306.1 147 RHNHSLC 153 ****8 PP

Sequence ? help Back to Top
Protein Sequence Length: 761 aa Download sequence
MAAGDRGDGL FEDRSVCRVE ISPGSTKYWC PISDDGSKPV LNQVFETLGG GVEFYKKYAA 60 AVGFDVRHSS KKTGRDGEVV SKYLVCSRQG FKAVSGQKAR TVEGEGDDDG SVPVKRRRIS 120 NRVGCKARVR FKKLRTGGYQ VVSFEDRHNH SLCSPLSRQF LKAHRKLDLG HQIFVANCTK 180 ANIGSSKSFR LCKEFMGGYE YVGATNVDFQ NVRRDLRVYI DGGDAQLAID KLVALKEKCA 240 AFFYKYDMDE NDQLRRVFWA DPVAIRNCSI FGEIVSFDAT YSTNRYKMVF VPFTAVDNHK 300 RCVTVGAGLL TKEDIPSYVW LLERFKEAME RVPACFVSDQ DPAMKVALAR VFPESRHRYC 360 MWHIMTKVSE KVGPSLSKDE VFRGKLNAIV WDEMQDADEF EGRWRGLMEE YGLVDHAWFT 420 QLWEARSFWI PAYFKDMFMG GLVRTTSRSE GENSFFGRYL SHTSSLVEFF SHFNSALEAQ 480 RHAQLKLNAE CEGHYTDLKT PLAIERHASV VYTVTVFYEV QAEIYAGCFS CRVVSLRECG 540 DGIVYGIKGD DDHQFTVQFN QLDNSATCSC SLYQRIGLLC RHIFMVYKDA QVTNIPSCYI 600 VARWTREVCL QPVFEVNGEI VDLIAGLDST QSLVKRLWSE IYSCVGLAGS NNDRVLQLTR 660 VLQQQKDAFM GDGDAPIGSR GNNPIIQAFC GAAPSVAVSI KPPVVAKNKG SGKRLKGGKE 720 KSIQANLKGR RKCHGCDKYA GHNSRNCPVL LALKAAEKNE V

Sequence ? help Back to Top

Protein Sequence Length: 761 aa Download sequence

MAAGDRGDGL FEDRSVCRVE ISPGSTKYWC PISDDGSKPV LNQVFETLGG GVEFYKKYAA  60
AVGFDVRHSS KKTGRDGEVV SKYLVCSRQG FKAVSGQKAR TVEGEGDDDG SVPVKRRRIS  120
NRVGCKARVR FKKLRTGGYQ VVSFEDRHNH SLCSPLSRQF LKAHRKLDLG HQIFVANCTK  180
ANIGSSKSFR LCKEFMGGYE YVGATNVDFQ NVRRDLRVYI DGGDAQLAID KLVALKEKCA  240
AFFYKYDMDE NDQLRRVFWA DPVAIRNCSI FGEIVSFDAT YSTNRYKMVF VPFTAVDNHK  300
RCVTVGAGLL TKEDIPSYVW LLERFKEAME RVPACFVSDQ DPAMKVALAR VFPESRHRYC  360
MWHIMTKVSE KVGPSLSKDE VFRGKLNAIV WDEMQDADEF EGRWRGLMEE YGLVDHAWFT  420
QLWEARSFWI PAYFKDMFMG GLVRTTSRSE GENSFFGRYL SHTSSLVEFF SHFNSALEAQ  480
RHAQLKLNAE CEGHYTDLKT PLAIERHASV VYTVTVFYEV QAEIYAGCFS CRVVSLRECG  540
DGIVYGIKGD DDHQFTVQFN QLDNSATCSC SLYQRIGLLC RHIFMVYKDA QVTNIPSCYI  600
VARWTREVCL QPVFEVNGEI VDLIAGLDST QSLVKRLWSE IYSCVGLAGS NNDRVLQLTR  660
VLQQQKDAFM GDGDAPIGSR GNNPIIQAFC GAAPSVAVSI KPPVVAKNKG SGKRLKGGKE  720
KSIQANLKGR RKCHGCDKYA GHNSRNCPVL LALKAAEKNE V

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	115	119	KRRRI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-99	FAR1 family protein