PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019196308.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 112aa    MW: 12373.1 Da    PI: 9.4659
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019196308.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.11.5e-201558245
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    +ienks  +vtfskRr+g++KKA+ELS+LC+ +v +i fs++ k
  XP_019196308.1 15 KIENKSHLEVTFSKRRAGLFKKASELSTLCGPDVGIIAFSPSEK 58
                    79**************************************9865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    
MARTSRGRQR VEMAKIENKS HLEVTFSKRR AGLFKKASEL STLCGPDVGI IAFSPSEKKV  60
FSFGHPSVER CLGENNPSPV NETGGMALVT EQFIEAHRNA RVQELNVEIS SL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-33M-type_MADS family protein