PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019196385.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 216aa MW: 23151.4 Da PI: 5.2633

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019196385.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137.1	6.4e-43	53	152	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++l e++r da++s+vyeA+ar+rdPvyG++g i +lq+q+++l+a+la XP_019196385.1 53 PCAACKILRRRCVDKCVLAPYFPPTDPLKFTIAHRVFGASNIIKMLQELGEDQRADAVNSIVYEAQARIRDPVYGCAGAICQLQKQISELQAQLA 147 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_019196385.1 148 KAQAE 152 *9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence
MEYTTGDMTA AASSLKTPFS PPSSSAASSP AAVSPTKTRS SSPVSSSVAV VSPCAACKIL 60 RRRCVDKCVL APYFPPTDPL KFTIAHRVFG ASNIIKMLQE LGEDQRADAV NSIVYEAQAR 120 IRDPVYGCAG AICQLQKQIS ELQAQLAKAQ AEIFNMQYQN ASLANLICLE TAAVAATTTA 180 SGIGIQEEQL PYFDNVGSFF LEDNCAALEP MLWTWK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	1e-54	LBD family protein