PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019196414.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 330aa    MW: 36942.2 Da    PI: 7.8965
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019196414.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding538e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l++++  +G g+W++ ++  g+ R++k+c++rw +yl
   XP_019196414.1 14 RGLWSPEEDEKLINYISNYGHGCWSSLPKLAGLQRCGKSCRLRWINYL 61
                     788*******************************************97 PP
2Myb_DNA-binding49.41.1e-1567109145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg+++++E  l++++++ lG++ W+ Ia++++ gRt++++k++w+
   XP_019196414.1  67 RGSFSPQEAALIIELHRILGNR-WAQIAKHLP-GRTDNEVKNFWN 109
                      899*******************.*********.***********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    
MGHHNCCNKQ KVKRGLWSPE EDEKLINYIS NYGHGCWSSL PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SPQEAALIIE LHRILGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLISNG  120
RLSHLPSSPA PNPNFQTFYS LQLPSSSNIP NFIQNNNNNV ILNLPSPPMA QQLQADLDQM  180
NSLVFPVMPS VPLSSPQMMM METTSIDPTW FLGYPQPQNL MDHYPQTSLY NNNFDNELMV  240
PLLHHHHNDE PIIIPNLPGN LVLSSSSSSL SSGIAQQDEF IVPNPIIPSL PAYEIMLPPM  300
PSLSPSSSSS SSFSAVPCSQ LVMNPSTWVP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.25e-80MYB family protein