PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019196602.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ARF

Protein Properties

Length: 680aa MW: 75725.6 Da PI: 6.0286

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019196602.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	79.6	3.3e-25	128	229	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ + ++ + t+ ++d +g++W++++iyr++++r++lt+GW++Fv+ ++L +gD++vF+ +++ XP_019196602.1 128 FAKTLTQSDANNGGGFSVPRYCAETIfplldfsDDPPVQ--TIFVKDVHGETWQFRHIYRGTPRRHLLTTGWSNFVNRKKLIAGDSIVFM--RKE 218 89***************************96555555..8********************************************..447 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ +v+++r+ XP_019196602.1 219 NGDIHVGIRRA 229 8888**997 PP
2	Auxin_resp	101.3	1.3e-33	296	379	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa a+t+++Fev+Y+P ast+eFvv+++ v++a+++k+++GmR+km etedss++++ +Gtv++v++ dp++Wp+S+W +L+ XP_019196602.1 296 AALLAATGQPFEVLYYPLASTPEFVVSASTVRDAMRIKWCPGMRVKMPSETEDSSRISWfMGTVSSVEAEDPIKWPDSPWHLLQ 379 567899***************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 680 aa Download sequence
MINAMNTVDN FMNETEKTEK LVDSQLWHAC AGRMVQMPEV NSKVFYFPQG HAEHFKRSVD 60 FAICGRIPPL ILSRVSAVRY LADSETDEVY AKIGLVPLGG SGEHDVYDDG GGFLGVVKYK 120 GEEKPNSFAK TLTQSDANNG GGFSVPRYCA ETIFPLLDFS DDPPVQTIFV KDVHGETWQF 180 RHIYRGTPRR HLLTTGWSNF VNRKKLIAGD SIVFMRKENG DIHVGIRRAR RRIGRGPEAF 240 SRWHTGTGSY VTSLNRAFSG NFSEGDEKFV QNDRTENCGV GTRGRSDVLI ESVTEAALLA 300 ATGQPFEVLY YPLASTPEFV VSASTVRDAM RIKWCPGMRV KMPSETEDSS RISWFMGTVS 360 SVEAEDPIKW PDSPWHLLQV AWDEPDLLQN IKRVSPWLVE LATDVCPVLQ PHLSPPRKKF 420 RLPQPLPLVR QLPAPSLLCN PVIPSSLLSC VSDNIPTGIQ GARHAQCGLS SKDLHFNKMN 480 SELFPFGFRE AESTILPKTL TGNVMDSSEN EENFSCLLTM GNNSPNLEKN NEEKIPAFML 540 FGKPIFAEQQ MPNSCSGETI GKSLSNSNQE KTRNLLDSPG SAVLQNGPLD NSSDGVFPFY 600 KTQKSEPGFG TGHCEVFIAS EDVEQTLESS FSSFNELYKK LVDVIGIEKT EKFNSALYQD 660 ATGAVKHTRD EPFSEFMKRI

Sequence ? help Back to Top

Protein Sequence Length: 680 aa Download sequence

MINAMNTVDN FMNETEKTEK LVDSQLWHAC AGRMVQMPEV NSKVFYFPQG HAEHFKRSVD  60
FAICGRIPPL ILSRVSAVRY LADSETDEVY AKIGLVPLGG SGEHDVYDDG GGFLGVVKYK  120
GEEKPNSFAK TLTQSDANNG GGFSVPRYCA ETIFPLLDFS DDPPVQTIFV KDVHGETWQF  180
RHIYRGTPRR HLLTTGWSNF VNRKKLIAGD SIVFMRKENG DIHVGIRRAR RRIGRGPEAF  240
SRWHTGTGSY VTSLNRAFSG NFSEGDEKFV QNDRTENCGV GTRGRSDVLI ESVTEAALLA  300
ATGQPFEVLY YPLASTPEFV VSASTVRDAM RIKWCPGMRV KMPSETEDSS RISWFMGTVS  360
SVEAEDPIKW PDSPWHLLQV AWDEPDLLQN IKRVSPWLVE LATDVCPVLQ PHLSPPRKKF  420
RLPQPLPLVR QLPAPSLLCN PVIPSSLLSC VSDNIPTGIQ GARHAQCGLS SKDLHFNKMN  480
SELFPFGFRE AESTILPKTL TGNVMDSSEN EENFSCLLTM GNNSPNLEKN NEEKIPAFML  540
FGKPIFAEQQ MPNSCSGETI GKSLSNSNQE KTRNLLDSPG SAVLQNGPLD NSSDGVFPFY  600
KTQKSEPGFG TGHCEVFIAS EDVEQTLESS FSSFNELYKK LVDVIGIEKT EKFNSALYQD  660
ATGAVKHTRD EPFSEFMKRI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein