PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019196722.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 260aa    MW: 29071.2 Da    PI: 9.8755
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019196722.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding422.2e-13556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE++ l+ +v+++G+g Wk I r        + R+  ++k++w+++
   XP_019196722.1  5 KQKWTSEEEKALKAGVAKHGTGKWKNILRDPEfgpslTSRSNIDLKDKWRNL 56
                     79****************************9999****************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    
MGNQKQKWTS EEEKALKAGV AKHGTGKWKN ILRDPEFGPS LTSRSNIDLK DKWRNLNGNV  60
AAQGSGEKSR ASRGRATTTG AENDAICDPC KSSQENRNVP RYSEMIFEAL SSIKDPNGSD  120
IGAIAGFIEQ RYEVPPNFRR LLSSKMRRLV LQGKVEKVQK CNYMIKDVPV GTRTPSPKKK  180
EVRPRPTQSL TLNMYSKRLL DAAMYAAYRM SEAENKSFLA AEAVKEAERV SKLSEVAESM  240
LQFVTEIYDQ CMEGEVVLLA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.22e-71MYB_related family protein