PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019197003.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

G2-like

Protein Properties

Length: 467aa MW: 51551.6 Da PI: 5.2465

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019197003.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.2	3.2e-32	254	308	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+F+eav++L G+ekAtPk++l+lm+v+gLt++hvkSHLQkYRl XP_019197003.1 254 KPRMRWTPELHESFMEAVKKLDGAEKATPKAVLKLMNVEGLTIYHVKSHLQKYRL 308 79****************************************************8 PP
2	Myb_DNA-binding	52.3	1.3e-16	256	307	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT+e++e + +avk+l g t+k++ + m+ +g+t +++ks++qky+ XP_019197003.1 256 RMRWTPELHESFMEAVKKLDGAekaTPKAVLKLMNvEGLTIYHVKSHLQKYR 307 89****************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence
MKNYMFLPGR HPELEDEVSE SYCTTVSDIH NVSSGEQHLL ADDCSSGSVP HNLSSDFLHK 60 CTEKSPIVSP TPNQCSSFSS ASHVQQPQNQ FSRSSMFCTS LHLSSSSSLE TTLRLGSLPF 120 LPDPSPHRLP NNFTIQSSDS PLHVQSDEGP SEASLKILQN ILLDEPDGSV KHGHCEINDL 180 QLTEQMELQL LSDELDIAIG GDVENPRIDE IYEEPQALIQ QSRESTPSQN FLSCTLPTDK 240 LSVPPSAVPA ASHKPRMRWT PELHESFMEA VKKLDGAEKA TPKAVLKLMN VEGLTIYHVK 300 SHLQKYRLAK YMPERTEEKK TSSSEDKKAT VNGKGSEGRK KGNIQVMEAL RMQMEVQKQL 360 HEQLEVQRAL QVRIEEHARY LQKILEEQQK GGCSVPAPPQ TGSCADSEPR LASSPTSVSP 420 SCDDVASSKL EAEDGGGILE HETPHKRPRT ANSESSSVEV LDESCKN

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence

MKNYMFLPGR HPELEDEVSE SYCTTVSDIH NVSSGEQHLL ADDCSSGSVP HNLSSDFLHK  60
CTEKSPIVSP TPNQCSSFSS ASHVQQPQNQ FSRSSMFCTS LHLSSSSSLE TTLRLGSLPF  120
LPDPSPHRLP NNFTIQSSDS PLHVQSDEGP SEASLKILQN ILLDEPDGSV KHGHCEINDL  180
QLTEQMELQL LSDELDIAIG GDVENPRIDE IYEEPQALIQ QSRESTPSQN FLSCTLPTDK  240
LSVPPSAVPA ASHKPRMRWT PELHESFMEA VKKLDGAEKA TPKAVLKLMN VEGLTIYHVK  300
SHLQKYRLAK YMPERTEEKK TSSSEDKKAT VNGKGSEGRK KGNIQVMEAL RMQMEVQKQL  360
HEQLEVQRAL QVRIEEHARY LQKILEEQQK GGCSVPAPPQ TGSCADSEPR LASSPTSVSP  420
SCDDVASSKL EAEDGGGILE HETPHKRPRT ANSESSSVEV LDESCKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.1	2e-79	G2-like family protein