PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019197132.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 1032aa MW: 113454 Da PI: 4.991

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019197132.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.3	8.3e-19	37	83	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+l +av+++ g++Wk+Ia+++ Rt+ qc +rwqk+l XP_019197132.1 37 KGQWTPEEDEILRKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 83 799**************************9.**********986 PP
2	Myb_DNA-binding	65.9	7.6e-21	89	135	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde+++++v+++G++ W+tIa++++ gR +kqc++rw+++l XP_019197132.1 89 KGPWSKEEDEIIIELVNKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 135 79****************************.***********97 PP
3	Myb_DNA-binding	48.2	2.5e-15	141	183	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ l++a++ +G++ W+ + ++ gRt++ +k++w+ XP_019197132.1 141 KEAWTQEEELALIRAHQIYGNK-WAELTKFLP-GRTDNAIKNHWN 183 579*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1032 aa Download sequence
MESDRTSATP TDGVSNSLQR VRHLHGRTSG PTRRSTKGQW TPEEDEILRK AVQRFKGKNW 60 KKIAECFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEII IELVNKYGPK KWSTIAQHLP 120 GRIGKQCRER WHNHLNPSIN KEAWTQEEEL ALIRAHQIYG NKWAELTKFL PGRTDNAIKN 180 HWNSSVKKKL DSYLASGLLS QFPALPNINS SNQILPTTSS KFQQSSEDRS VCREGKEVDE 240 VSECSQGSAL VGCSQSTSDM GNTFVHTREE RGVKDESSHE KDPSLSSATC SKNFNTFHEV 300 ACSMPEIPND LNDTSQFIEQ TIAHEIGASI TRDGHLNPDD IPNMSALDLM QVQAGFFMQF 360 LNSCDSHGVP PLQTAMDLGT ISHMGSIAVG SGNQDDMFNL EDGHCGIIYT GPENHQCFPS 420 GNGIRGVEES ADSVILQPSN YQIPEAGMLA PQSCNAISSD NSGPSSYQAF SVPIMFGVDS 480 DQLINPIENP RQEIITCGDF VYASEPGSST CGNGMDGQGV STCNRMDGLG LKDQIDQYIQ 540 ENESVKLVPV NDFGPVQPDS VQTCSVNEQN IVKDEKRDPG TLCYEPPRFP SLDVPFFSCD 600 LIQSGTDMQQ EYSPLGIRQL MMSSMNCLTP FRLWDSPSRD SSPDAVLKSA AKTFTCTPSI 660 LKKRHRDLVS PLSEKRSEKK LESDNKHEFS DLARNFSRLE VIVDDAGNEK ATRSSPLPNQ 720 EFISEASIED KENLNPEFEG TTKEGMEGTR FSGRRDLGRE SNKGGADDAI HVKRTVGVLV 780 ERGKDDPLFF SPDRFGSKSD RAVTQTTKAL GNSCLNRLET APNQGTVSSS SEAPCLSVCS 840 PRICAIKEGN NLVVATSVQS VPASENAGEG SGNGVGLDNN ISIFGETPFR RSMESPSAWK 900 SPWFINSFLS SPRVDTEITL EDFGFLFSPG DRSYDAIGLM KQLSEQTAAT FADAQEVLGG 960 ETPESILRGR CSKNLKADEN TSQFTSNVLT ERRMLDFSEC GTPGKKAESG KFPGGSSSSI 1020 SSPSSYLLKE CR

Sequence ? help Back to Top

Protein Sequence Length: 1032 aa Download sequence

MESDRTSATP TDGVSNSLQR VRHLHGRTSG PTRRSTKGQW TPEEDEILRK AVQRFKGKNW  60
KKIAECFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEII IELVNKYGPK KWSTIAQHLP  120
GRIGKQCRER WHNHLNPSIN KEAWTQEEEL ALIRAHQIYG NKWAELTKFL PGRTDNAIKN  180
HWNSSVKKKL DSYLASGLLS QFPALPNINS SNQILPTTSS KFQQSSEDRS VCREGKEVDE  240
VSECSQGSAL VGCSQSTSDM GNTFVHTREE RGVKDESSHE KDPSLSSATC SKNFNTFHEV  300
ACSMPEIPND LNDTSQFIEQ TIAHEIGASI TRDGHLNPDD IPNMSALDLM QVQAGFFMQF  360
LNSCDSHGVP PLQTAMDLGT ISHMGSIAVG SGNQDDMFNL EDGHCGIIYT GPENHQCFPS  420
GNGIRGVEES ADSVILQPSN YQIPEAGMLA PQSCNAISSD NSGPSSYQAF SVPIMFGVDS  480
DQLINPIENP RQEIITCGDF VYASEPGSST CGNGMDGQGV STCNRMDGLG LKDQIDQYIQ  540
ENESVKLVPV NDFGPVQPDS VQTCSVNEQN IVKDEKRDPG TLCYEPPRFP SLDVPFFSCD  600
LIQSGTDMQQ EYSPLGIRQL MMSSMNCLTP FRLWDSPSRD SSPDAVLKSA AKTFTCTPSI  660
LKKRHRDLVS PLSEKRSEKK LESDNKHEFS DLARNFSRLE VIVDDAGNEK ATRSSPLPNQ  720
EFISEASIED KENLNPEFEG TTKEGMEGTR FSGRRDLGRE SNKGGADDAI HVKRTVGVLV  780
ERGKDDPLFF SPDRFGSKSD RAVTQTTKAL GNSCLNRLET APNQGTVSSS SEAPCLSVCS  840
PRICAIKEGN NLVVATSVQS VPASENAGEG SGNGVGLDNN ISIFGETPFR RSMESPSAWK  900
SPWFINSFLS SPRVDTEITL EDFGFLFSPG DRSYDAIGLM KQLSEQTAAT FADAQEVLGG  960
ETPESILRGR CSKNLKADEN TSQFTSNVLT ERRMLDFSEC GTPGKKAESG KFPGGSSSSI  1020
SSPSSYLLKE CR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.2	0.0	MYB family protein