PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019197185.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

E2F/DP

Protein Properties

Length: 389aa MW: 43912.6 Da PI: 9.338

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019197185.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	75.3	6e-24	17	82	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL+ll+++fl+l++++ +++ l+++a++L v +rRRiYDi+NVLe+++++++k+kn+++wkg XP_019197185.1 17 RKQKSLGLLCSNFLSLYNREGVETIGLDDAARQL---GV--ERRRIYDIVNVLESVGVLSRKAKNRYTWKG 82 79***************999********.....****************************98 PP
2	E2F_TDP	71.3	1.1e-22	152	232	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 r+eksL+llt++f+kl+ +++ ++++l+e+ak L+ + ++k+RR+YDi+NVL++++ iek ++k+++rw g XP_019197185.1 152 RREKSLGLLTRNFIKLFLCTNVDMLCLDEAAKILLGDgrppsINRTKVRRLYDIANVLSSMKFIEKthhpaTRKPAFRWLG 232 689************************************97779********************99*****87 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MALVSSASKD SGSVYCRKQK SLGLLCSNFL SLYNREGVET IGLDDAARQL GVERRRIYDI 60 VNVLESVGVL SRKAKNRYTW KGFEAIPRAF EELKEEGLKE SFSAYSGDVS VQVSDDEEDD 120 RHSNPNVSSQ NEKSDSISAP KLADSSKPAD NRREKSLGLL TRNFIKLFLC TNVDMLCLDE 180 AAKILLGDGR PPSINRTKVR RLYDIANVLS SMKFIEKTHH PATRKPAFRW LGLKGKSENQ 240 AANASEDNLG CNQSRKRVFG TELTNTTTKR YKLDKPTDAF GESMKSKLAA QVKCENLENE 300 FDRPKQDLGS RTNRKSYEFG PFAPVPVPKF EASESGERTK VIRELESLAS TYHPQYHNQA 360 LRDLFSHYME AWKSWYLEIA GKKPIQMLS

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MALVSSASKD SGSVYCRKQK SLGLLCSNFL SLYNREGVET IGLDDAARQL GVERRRIYDI  60
VNVLESVGVL SRKAKNRYTW KGFEAIPRAF EELKEEGLKE SFSAYSGDVS VQVSDDEEDD  120
RHSNPNVSSQ NEKSDSISAP KLADSSKPAD NRREKSLGLL TRNFIKLFLC TNVDMLCLDE  180
AAKILLGDGR PPSINRTKVR RLYDIANVLS SMKFIEKTHH PATRKPAFRW LGLKGKSENQ  240
AANASEDNLG CNQSRKRVFG TELTNTTTKR YKLDKPTDAF GESMKSKLAA QVKCENLENE  300
FDRPKQDLGS RTNRKSYEFG PFAPVPVPKF EASESGERTK VIRELESLAS TYHPQYHNQA  360
LRDLFSHYME AWKSWYLEIA GKKPIQMLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48160.2	1e-120	E2F/DP family protein