PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019197186.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

E2F/DP

Protein Properties

Length: 388aa MW: 43841.5 Da PI: 9.338

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019197186.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	75.3	6e-24	17	82	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL+ll+++fl+l++++ +++ l+++a++L v +rRRiYDi+NVLe+++++++k+kn+++wkg XP_019197186.1 17 RKQKSLGLLCSNFLSLYNREGVETIGLDDAARQL---GV--ERRRIYDIVNVLESVGVLSRKAKNRYTWKG 82 79***************999********.....****************************98 PP
2	E2F_TDP	71.3	1.1e-22	151	231	1	71
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 r+eksL+llt++f+kl+ +++ ++++l+e+ak L+ + ++k+RR+YDi+NVL++++ iek ++k+++rw g XP_019197186.1 151 RREKSLGLLTRNFIKLFLCTNVDMLCLDEAAKILLGDgrppsINRTKVRRLYDIANVLSSMKFIEKthhpaTRKPAFRWLG 231 689************************************97779********************99*****87 PP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence
MALVSSASKD SGSVYCRKQK SLGLLCSNFL SLYNREGVET IGLDDAARQL GVERRRIYDI 60 VNVLESVGVL SRKAKNRYTW KGFEAIPRAF EELKEEGLKE SFSAYSGDVS VQVSDDEEDD 120 RHSNPNVSSQ NEKSDSISAP KLADSSKPDN RREKSLGLLT RNFIKLFLCT NVDMLCLDEA 180 AKILLGDGRP PSINRTKVRR LYDIANVLSS MKFIEKTHHP ATRKPAFRWL GLKGKSENQA 240 ANASEDNLGC NQSRKRVFGT ELTNTTTKRY KLDKPTDAFG ESMKSKLAAQ VKCENLENEF 300 DRPKQDLGSR TNRKSYEFGP FAPVPVPKFE ASESGERTKV IRELESLAST YHPQYHNQAL 360 RDLFSHYMEA WKSWYLEIAG KKPIQMLS

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence

MALVSSASKD SGSVYCRKQK SLGLLCSNFL SLYNREGVET IGLDDAARQL GVERRRIYDI  60
VNVLESVGVL SRKAKNRYTW KGFEAIPRAF EELKEEGLKE SFSAYSGDVS VQVSDDEEDD  120
RHSNPNVSSQ NEKSDSISAP KLADSSKPDN RREKSLGLLT RNFIKLFLCT NVDMLCLDEA  180
AKILLGDGRP PSINRTKVRR LYDIANVLSS MKFIEKTHHP ATRKPAFRWL GLKGKSENQA  240
ANASEDNLGC NQSRKRVFGT ELTNTTTKRY KLDKPTDAFG ESMKSKLAAQ VKCENLENEF  300
DRPKQDLGSR TNRKSYEFGP FAPVPVPKFE ASESGERTKV IRELESLAST YHPQYHNQAL  360
RDLFSHYMEA WKSWYLEIAG KKPIQMLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48160.2	1e-121	E2F/DP family protein