PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019197421.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

CO-like

Protein Properties

Length: 390aa MW: 43269 Da PI: 4.7806

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019197421.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	25	3.9e-08	16	60	2	40
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 ++r+C+ +++ + l+C+ ++ lC C e H+ Ht++ XP_019197421.1 16 SNRNCDFCGSATAVLYCRADSASLCLGCDREVHSTnplftkHTRS 60 5899*****************************768888888875 PP
2	zf-B_box	16.1	2.3e-05	61	92	4	36
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 C+ ++ ++++fC + +C++C e+H XP_019197421.1 61 LLCDACDASPATIFCCNHAAVFCQNCDWESH-T 92 57**************************999.3 PP
3	CCT	62.8	1.1e-21	339	382	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Re a++RYkeK+ktR++eK+irYesRK++Ae+R R+KGrF+k + XP_019197421.1 339 RETAISRYKEKKKTRRYEKQIRYESRKVRAETRIRIKGRFAKID 382 99***************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence
MTELKEEQEA AEEGKSNRNC DFCGSATAVL YCRADSASLC LGCDREVHST NPLFTKHTRS 60 LLCDACDASP ATIFCCNHAA VFCQNCDWES HTLCLSPAPH VRRPLEGFSG CPSVAELLAV 120 FGFQDVGKKA LLQDDDRYGG AGDDSNGDDG ISDYLVWDTP PVVSLDDLIA PSDSKPNFQA 180 MGVPPLPKNR NAACGQHKEE ILAQLREMSK LEPNICADQE GFEPVVGIQA MENELNDFFG 240 EKNSGFKQDM EPTLVPFSET TGFQWYDDVG EFADQGFCPT LLQGFNETTC LVPDKDSDVG 300 DSSGAANNHN EGQSNHSSHT ETFQVPHKVA PRELNSRERE TAISRYKEKK KTRRYEKQIR 360 YESRKVRAET RIRIKGRFAK IDQRDSGTTR

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence

MTELKEEQEA AEEGKSNRNC DFCGSATAVL YCRADSASLC LGCDREVHST NPLFTKHTRS  60
LLCDACDASP ATIFCCNHAA VFCQNCDWES HTLCLSPAPH VRRPLEGFSG CPSVAELLAV  120
FGFQDVGKKA LLQDDDRYGG AGDDSNGDDG ISDYLVWDTP PVVSLDDLIA PSDSKPNFQA  180
MGVPPLPKNR NAACGQHKEE ILAQLREMSK LEPNICADQE GFEPVVGIQA MENELNDFFG  240
EKNSGFKQDM EPTLVPFSET TGFQWYDDVG EFADQGFCPT LLQGFNETTC LVPDKDSDVG  300
DSSGAANNHN EGQSNHSSHT ETFQVPHKVA PRELNSRERE TAISRYKEKK KTRRYEKQIR  360
YESRKVRAET RIRIKGRFAK IDQRDSGTTR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47890.1	4e-77	CO-like family protein