PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019197480.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 669aa MW: 74792.2 Da PI: 4.9994

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019197480.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.8	4.4e-14	475	521	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +ErrRR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L+ XP_019197480.1 475 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 521 7999********************8.....8***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 669 aa Download sequence
MAETPGGAAH LQTLLQTAVQ SVHWTYSLFW NLCPHNGMLV WSDGYYNGAI KTRKTVQGTE 60 VSAEEASLHR SQQIKELYES LSATAEESNG GGGQQPARRP SAALSPEDLT ESEWFYLMCI 120 SFSFPSAVGL PGKAYAKRQH IWLTGANEVE SKVFSRAILA KSARIQTVVC IPLMDGVVEL 180 GTTERVKEDY EFIQHIKNHF MEPQHHHNHP KPALSEHSSS EPPSQQLHSP AMASGHHHHH 240 HRQVRAEEED EEEEEDEEEE EEEEEDEEEE EDEEEELESD ADVGPKNHQT GDHVMAAAEE 300 EEEQNINAVV AETNVGASEL MQFDMSESIR VGTPPDDAST DLDSDFHLLP QMQNPTFLSH 360 HQGAPMLEEF PREDTHYSET ISSILRHQCG QWSDFSTTVA AADYVVHSAS SAFSRWTTAA 420 SSTCSSHRSA QWVLKYTLLT VPFLHAKNSH CGGGADTIPS SKLCKAAPQE EPNVNHVLAE 480 RRRREKLNER FIILRSLVPF VTKMDKASIL GDTIEYVKQL RRRIQELEAP TEVDRQSITG 540 GVTRKNPPQK SGASRTQMGP RLNKRGTRTA ERGGRPENNT EEDAVVQVEV SIIESDALVE 600 LRCTYRQGLI LDVMQMLKEL GLEITTVQSS VNGGIFCAEL RAKLKENMKG RKATIMEVKK 660 AIHSIIPQF

Sequence ? help Back to Top

Protein Sequence Length: 669 aa Download sequence

MAETPGGAAH LQTLLQTAVQ SVHWTYSLFW NLCPHNGMLV WSDGYYNGAI KTRKTVQGTE  60
VSAEEASLHR SQQIKELYES LSATAEESNG GGGQQPARRP SAALSPEDLT ESEWFYLMCI  120
SFSFPSAVGL PGKAYAKRQH IWLTGANEVE SKVFSRAILA KSARIQTVVC IPLMDGVVEL  180
GTTERVKEDY EFIQHIKNHF MEPQHHHNHP KPALSEHSSS EPPSQQLHSP AMASGHHHHH  240
HRQVRAEEED EEEEEDEEEE EEEEEDEEEE EDEEEELESD ADVGPKNHQT GDHVMAAAEE  300
EEEQNINAVV AETNVGASEL MQFDMSESIR VGTPPDDAST DLDSDFHLLP QMQNPTFLSH  360
HQGAPMLEEF PREDTHYSET ISSILRHQCG QWSDFSTTVA AADYVVHSAS SAFSRWTTAA  420
SSTCSSHRSA QWVLKYTLLT VPFLHAKNSH CGGGADTIPS SKLCKAAPQE EPNVNHVLAE  480
RRRREKLNER FIILRSLVPF VTKMDKASIL GDTIEYVKQL RRRIQELEAP TEVDRQSITG  540
GVTRKNPPQK SGASRTQMGP RLNKRGTRTA ERGGRPENNT EEDAVVQVEV SIIESDALVE  600
LRCTYRQGLI LDVMQMLKEL GLEITTVQSS VNGGIFCAEL RAKLKENMKG RKATIMEVKK  660
AIHSIIPQF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	480	485	ERRRRE
2	481	486	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	5e-88	bHLH family protein