PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019197481.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 668aa MW: 74655 Da PI: 4.9613

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019197481.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.8	4.4e-14	474	520	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +ErrRR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L+ XP_019197481.1 474 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 520 7999********************8.....8***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 668 aa Download sequence
MAETPGGAAH LQTLLQTAVQ SVHWTYSLFW NLCPHNGMLV WSDGYYNGAI KTRKTVQGTE 60 VSAEEASLHR SQQIKELYES LSATAEESNG GGGQQPARRP SAALSPEDLT ESEWFYLMCI 120 SFSFPSAVGL PGKAYAKRQH IWLTGANEVE SKVFSRAILA KSARIQTVVC IPLMDGVVEL 180 GTTERVKEDY EFIQHIKNHF MEPQHHHNHP KPALSEHSSS EPPSQQLHSP AMASGHHHHH 240 HRQVRAEEED EEEEEDEEEE EEEEEDEEEE EDEEEELESD ADVGPKNHQT GDHVMAAAEE 300 EEEQNINAVV AETNVGASEL MQFDMSESIR VGTPPDDAST DLDSDFHLLP QMQNPTFLSH 360 QGAPMLEEFP REDTHYSETI SSILRHQCGQ WSDFSTTVAA ADYVVHSASS AFSRWTTAAS 420 STCSSHRSAQ WVLKYTLLTV PFLHAKNSHC GGGADTIPSS KLCKAAPQEE PNVNHVLAER 480 RRREKLNERF IILRSLVPFV TKMDKASILG DTIEYVKQLR RRIQELEAPT EVDRQSITGG 540 VTRKNPPQKS GASRTQMGPR LNKRGTRTAE RGGRPENNTE EDAVVQVEVS IIESDALVEL 600 RCTYRQGLIL DVMQMLKELG LEITTVQSSV NGGIFCAELR AKLKENMKGR KATIMEVKKA 660 IHSIIPQF

Sequence ? help Back to Top

Protein Sequence Length: 668 aa Download sequence

MAETPGGAAH LQTLLQTAVQ SVHWTYSLFW NLCPHNGMLV WSDGYYNGAI KTRKTVQGTE  60
VSAEEASLHR SQQIKELYES LSATAEESNG GGGQQPARRP SAALSPEDLT ESEWFYLMCI  120
SFSFPSAVGL PGKAYAKRQH IWLTGANEVE SKVFSRAILA KSARIQTVVC IPLMDGVVEL  180
GTTERVKEDY EFIQHIKNHF MEPQHHHNHP KPALSEHSSS EPPSQQLHSP AMASGHHHHH  240
HRQVRAEEED EEEEEDEEEE EEEEEDEEEE EDEEEELESD ADVGPKNHQT GDHVMAAAEE  300
EEEQNINAVV AETNVGASEL MQFDMSESIR VGTPPDDAST DLDSDFHLLP QMQNPTFLSH  360
QGAPMLEEFP REDTHYSETI SSILRHQCGQ WSDFSTTVAA ADYVVHSASS AFSRWTTAAS  420
STCSSHRSAQ WVLKYTLLTV PFLHAKNSHC GGGADTIPSS KLCKAAPQEE PNVNHVLAER  480
RRREKLNERF IILRSLVPFV TKMDKASILG DTIEYVKQLR RRIQELEAPT EVDRQSITGG  540
VTRKNPPQKS GASRTQMGPR LNKRGTRTAE RGGRPENNTE EDAVVQVEVS IIESDALVEL  600
RCTYRQGLIL DVMQMLKELG LEITTVQSSV NGGIFCAELR AKLKENMKGR KATIMEVKKA  660
IHSIIPQF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	479	484	ERRRRE
2	480	485	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	5e-88	bHLH family protein