PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019197893.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

CO-like

Protein Properties

Length: 361aa MW: 38597.3 Da PI: 6.4992

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019197893.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22.3	2.7e-07	33	75	4	39
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39 + C+ ++ ++ fC+ + ++C C ++ H+ H++ XP_019197893.1 33 KPCDYCKATVASVFCRADAAFMCIACDTAVHNAtaaaagaHER 75 68****99*******************767777777775 PP
2	zf-B_box	26.6	1.3e-08	76	121	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ +++ C+ + lC +C +H+ H++vp+ XP_019197893.1 76 VWVCEVCEQVPASVTCKADAAALCVTCDHDIHSAnplaqrHERVPV 121 689*****************************66899999999986 PP
3	CCT	69.6	8e-24	292	335	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++ XP_019197893.1 292 REAKVLRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRT 335 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MGVGMVEGGV GVGLKCFSGG WTTAPAAPNT AAKPCDYCKA TVASVFCRAD AAFMCIACDT 60 AVHNATAAAA GAHERVWVCE VCEQVPASVT CKADAAALCV TCDHDIHSAN PLAQRHERVP 120 VTPFYDSAAE AALKSSAFAT NALPPNPCNA NIDIPIPWNP SKPPPLLIPE IKSSVDLSFS 180 DSDHFLDFDY PISSLETNNL AQHDSLNDSI VPVQPTKPSA AIANRFDIDF TRPNTKSYNA 240 HSLSHSVSSS SLDAGVVPDG SVASELSYSL GQNVTGGVDL SNSATQLVGK EREAKVLRYR 300 EKRKNRRFEK TIRYASRKAY AETRPRIKGR FAKRTEVESD IDAIFSADFV ADHGYGVVPS 360 F

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MGVGMVEGGV GVGLKCFSGG WTTAPAAPNT AAKPCDYCKA TVASVFCRAD AAFMCIACDT  60
AVHNATAAAA GAHERVWVCE VCEQVPASVT CKADAAALCV TCDHDIHSAN PLAQRHERVP  120
VTPFYDSAAE AALKSSAFAT NALPPNPCNA NIDIPIPWNP SKPPPLLIPE IKSSVDLSFS  180
DSDHFLDFDY PISSLETNNL AQHDSLNDSI VPVQPTKPSA AIANRFDIDF TRPNTKSYNA  240
HSLSHSVSSS SLDAGVVPDG SVASELSYSL GQNVTGGVDL SNSATQLVGK EREAKVLRYR  300
EKRKNRRFEK TIRYASRKAY AETRPRIKGR FAKRTEVESD IDAIFSADFV ADHGYGVVPS  360
F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	5e-54	CO-like family protein