PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019198052.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TCP

Protein Properties

Length: 416aa MW: 43553.1 Da PI: 7.9018

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019198052.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	131.3	9e-41	89	219	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s + XP_019198052.1 89 PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSVPsqlrsqy 183 789******************************************************************99987777777777555555555566 PP TCP 89 ...................................k 89 + XP_019198052.1 184 fnpnfslsqrrslfpagiglspadssattllnfqgA 219 666666777777777777775443333333333330 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
MERGGDDHLH HHHHNRRPTF PFQLLEKKED EACSSSSSSA TAIVPYPSLA ISSSLDTSAN 60 PNAAAARSTS ASAAVSDSAA LAEPSKKPPP KRTSTKDRHT KVDGRGRRIR MPALCAARVF 120 QLTRELGHKS DGETIEWLLQ QAEPAVIAAT GTGTIPANFT SLNISLRSSG SSMSVPSQLR 180 SQYFNPNFSL SQRRSLFPAG IGLSPADSSA TTLLNFQGAN ININNPSMQL SAAAAAAKPE 240 LRDNSIDLTE PTTAEEESIS RKRRSEQDLQ HQMGSYLLQS SAGTMPASHA SVPANFWMVT 300 NSTNPVMGGA AGDPIWTFPS VSNNAAAAAA ALYRGTMSSG LHFMNFPTPV ALLPSQQLGT 360 NIGGGGGGNG MGEGQLGMFA GLNPYHRSGG GGGVSESQAS GSHSHHGGDD RHDTTS

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

MERGGDDHLH HHHHNRRPTF PFQLLEKKED EACSSSSSSA TAIVPYPSLA ISSSLDTSAN  60
PNAAAARSTS ASAAVSDSAA LAEPSKKPPP KRTSTKDRHT KVDGRGRRIR MPALCAARVF  120
QLTRELGHKS DGETIEWLLQ QAEPAVIAAT GTGTIPANFT SLNISLRSSG SSMSVPSQLR  180
SQYFNPNFSL SQRRSLFPAG IGLSPADSSA TTLLNFQGAN ININNPSMQL SAAAAAAKPE  240
LRDNSIDLTE PTTAEEESIS RKRRSEQDLQ HQMGSYLLQS SAGTMPASHA SVPANFWMVT  300
NSTNPVMGGA AGDPIWTFPS VSNNAAAAAA ALYRGTMSSG LHFMNFPTPV ALLPSQQLGT  360
NIGGGGGGNG MGEGQLGMFA GLNPYHRSGG GGGVSESQAS GSHSHHGGDD RHDTTS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	260	265	SRKRRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47620.1	3e-46	TCP family protein