PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019198053.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TCP

Protein Properties

Length: 406aa MW: 42679.2 Da PI: 7.5545

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019198053.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	131.5	8.3e-41	79	210	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s + XP_019198053.1 79 PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSVPsqlrsqy 173 789******************************************************************99987777777777555555555566 PP TCP 89 ....................................k 89 + XP_019198053.1 174 fnpnfslsqrrslfpagiglspadssattllnfqgaN 210 6666667777777777777754433333333333330 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
MERGGDDHLH HHHHNRRPTF PFQLLEKKED EACSSSSSSA TAIVPYPSLA ISSSLDTSAN 60 PNAAVSDSAA LAEPSKKPPP KRTSTKDRHT KVDGRGRRIR MPALCAARVF QLTRELGHKS 120 DGETIEWLLQ QAEPAVIAAT GTGTIPANFT SLNISLRSSG SSMSVPSQLR SQYFNPNFSL 180 SQRRSLFPAG IGLSPADSSA TTLLNFQGAN ININNPSMQL SAAAAAAKPE LRDNSIDLTE 240 PTTAEEESIS RKRRSEQDLQ HQMGSYLLQS SAGTMPASHA SVPANFWMVT NSTNPVMGGA 300 AGDPIWTFPS VSNNAAAAAA ALYRGTMSSG LHFMNFPTPV ALLPSQQLGT NIGGGGGGNG 360 MGEGQLGMFA GLNPYHRSGG GGGVSESQAS GSHSHHGGDD RHDTTS

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

MERGGDDHLH HHHHNRRPTF PFQLLEKKED EACSSSSSSA TAIVPYPSLA ISSSLDTSAN  60
PNAAVSDSAA LAEPSKKPPP KRTSTKDRHT KVDGRGRRIR MPALCAARVF QLTRELGHKS  120
DGETIEWLLQ QAEPAVIAAT GTGTIPANFT SLNISLRSSG SSMSVPSQLR SQYFNPNFSL  180
SQRRSLFPAG IGLSPADSSA TTLLNFQGAN ININNPSMQL SAAAAAAKPE LRDNSIDLTE  240
PTTAEEESIS RKRRSEQDLQ HQMGSYLLQS SAGTMPASHA SVPANFWMVT NSTNPVMGGA  300
AGDPIWTFPS VSNNAAAAAA ALYRGTMSSG LHFMNFPTPV ALLPSQQLGT NIGGGGGGNG  360
MGEGQLGMFA GLNPYHRSGG GGGVSESQAS GSHSHHGGDD RHDTTS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	250	255	SRKRRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47620.1	1e-46	TCP family protein