PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019198062.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 321aa MW: 35345.6 Da PI: 7.9138

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019198062.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.7	2e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv ++++ G+g+W++++ g+ R+ k+c++rw +yl XP_019198062.1 14 KGPWTPEEDIILVSYIQENGPGNWRAVPTNTGLLRCSKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	50.4	5e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l XP_019198062.1 67 RGNFTEQEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence
MGRPPCCDKV GVKKGPWTPE EDIILVSYIQ ENGPGNWRAV PTNTGLLRCS KSCRLRWTNY 60 LRPGIKRGNF TEQEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLKKMQ 120 GEDNANADNI NGGANSSSSS HHSISKGQWE RRLQTDIHLA KQALCEALSL DKSNPVQPAP 180 NPPVQTGPYA SSAENIARLL ESWVKSNGPT RSNSETTTTQ TGLAGSTSSP SEATFDHSIF 240 SYNSEAFSAV ESKPVFARAA AAPPTFQTQT KPNNDNIAPP HETQMPLTLL EKWLFDDAAN 300 VQPQDGIMGI PVPLPETAEL F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47600.1	1e-105	MYB family protein