PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019198082.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 119aa    MW: 13418.4 Da    PI: 8.1078
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019198082.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.82.1e-3961061101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaC+ lr++C++dC++ pyfp ++p++fa+vhk+FGa+n +k+lk+++e +r d+++sl+yeA++r++dPvyG+vg+i+ lqq++ + +++la
  XP_019198082.1   6 RCAACRQLRKRCTSDCIFLPYFPPNDPQRFAVVHKIFGANNASKMLKQVEEYKRGDVAESLYYEAQCRVEDPVYGCVGIITLLQQEIYNFESQLA 100
                     6********************************************************************************************** PP

          DUF260  96 llkeel 101
                     ++++++
  XP_019198082.1 101 KIEAQI 106
                     998875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    
MATGSRCAAC RQLRKRCTSD CIFLPYFPPN DPQRFAVVHK IFGANNASKM LKQVEEYKRG  60
DVAESLYYEA QCRVEDPVYG CVGIITLLQQ EIYNFESQLA KIEAQIQLLK AQGVATPSH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.18e-46LBD family protein