PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019198125.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 216aa MW: 23406.6 Da PI: 5.8825

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019198125.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.6	7.1e-06	39	87	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r+ + erE+ R+++N+ f L l + + + Ka+iL Av+ +k+L XP_019198125.1 39 KRVHKAEREKMKREHLNDLFLSLANALEMP-----EQNGKASILNGAVQSVKEL 87 79999************************8.....5677888999999988876 PP

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence
MGSDRPAAPA VEKGTTPAAP SPNGSGLGID KKNKGKVPKR VHKAEREKMK REHLNDLFLS 60 LANALEMPEQ NGKASILNGA VQSVKELLAQ IEQLRRGNAT LLSESQYVSM EKTELQDENC 120 ALVEQIGKLE SEIKERRADL SLDLNLAPPE CQQPSTSETA FQISNPVYVL PQVYPLPGAA 180 QPSPTPPPVS KPLPRYPTLA DAWPSQILEK QGDLGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.2	1e-35	bHLH family protein