PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019198226.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 724aa MW: 82775.2 Da PI: 7.296

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019198226.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	56	1.4e-17	80	179	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkek.dgkwevtklele 84 +fY++YA+++GF+vr++++k+ +g+it+r Cs+ g++ ++ + + ++r+r+++r+gC+ak+ k+ k + +ev+ +e+ XP_019198226.1 80 EFYKAYATTAGFDVRRASEKTD-WQGQITWRYVLCSRFGFKLPTGQGdgvgvlsaedNAPTKRRRVTNRVGCNAKIIFKRAKdGNGYEVAAIEKR 173 6*************998776.8888************99999***99999999**************97889***** PP FAR1 85 HnHela 90 H+H l+ XP_019198226.1 174 HTHLLC 179 *998 PP

Sequence ? help Back to Top
Protein Sequence Length: 724 aa Download sequence
MVVKPNGREL RLYPECHTSP KHIELTNLHP LTGEDGLTGK PTGCLMNISP GSTKYWTPQC 60 EAAKTPFEGQ VFTTLEGGIE FYKAYATTAG FDVRRASEKT DWQGQITWRY VLCSRFGFKL 120 PTGQGDGVGV LSAEDNAPTK RRRVTNRVGC NAKIIFKRAK DGNGYEVAAI EKRHTHLLCT 180 AVSRPFMKAN RNLDLGHQNF IINCAKANIG YTKSFTLYEE MVGGFENVGA TVTDFGNYKR 240 DIMAYIEGAD AQLVIDKYMA KKEVSTDFYF AHDVDELDQL CRIFWADPQA RHNFKLLGDV 300 MSFDATYSTN RYKLVFVPFT GVDHHKKSVT FAAGLIAKED VDSYTWLLEH FKTAMGKVPT 360 CTVTDQDPAM RVAISRVFDT TRHRYCMWHI MTKVCEKVGP TLARNEDFLR SLNNVVWNET 420 QTISEFEAAW QTVMEKHELV DHRWFTHLFE MREYWIPAFF NDMFMGGLMK TTSRSESENN 480 VFNSCTSPHL SLTDFFIKFE KAIDKQRHTQ TRLNADCEDK FPELKTTLLL ERQAATTYTI 540 AMFYDVQKEI LEACFLSQII NKTVEGNTVR LEIEDTNKMM HSVEYNSATR TTHCTCNMFN 600 RIGLQCRHVL LAFKDARLER IPGQYITPRW TRTTCWPYAQ LYANPEQGGP TEVLSGDTRI 660 GTVFDEFFKC VGNAYGNTDR ITELAQILKE YREKTTESMP QMETRAKKTD AVFLVGDVHG 720 NVHS

Sequence ? help Back to Top

Protein Sequence Length: 724 aa Download sequence

MVVKPNGREL RLYPECHTSP KHIELTNLHP LTGEDGLTGK PTGCLMNISP GSTKYWTPQC  60
EAAKTPFEGQ VFTTLEGGIE FYKAYATTAG FDVRRASEKT DWQGQITWRY VLCSRFGFKL  120
PTGQGDGVGV LSAEDNAPTK RRRVTNRVGC NAKIIFKRAK DGNGYEVAAI EKRHTHLLCT  180
AVSRPFMKAN RNLDLGHQNF IINCAKANIG YTKSFTLYEE MVGGFENVGA TVTDFGNYKR  240
DIMAYIEGAD AQLVIDKYMA KKEVSTDFYF AHDVDELDQL CRIFWADPQA RHNFKLLGDV  300
MSFDATYSTN RYKLVFVPFT GVDHHKKSVT FAAGLIAKED VDSYTWLLEH FKTAMGKVPT  360
CTVTDQDPAM RVAISRVFDT TRHRYCMWHI MTKVCEKVGP TLARNEDFLR SLNNVVWNET  420
QTISEFEAAW QTVMEKHELV DHRWFTHLFE MREYWIPAFF NDMFMGGLMK TTSRSESENN  480
VFNSCTSPHL SLTDFFIKFE KAIDKQRHTQ TRLNADCEDK FPELKTTLLL ERQAATTYTI  540
AMFYDVQKEI LEACFLSQII NKTVEGNTVR LEIEDTNKMM HSVEYNSATR TTHCTCNMFN  600
RIGLQCRHVL LAFKDARLER IPGQYITPRW TRTTCWPYAQ LYANPEQGGP TEVLSGDTRI  660
GTVFDEFFKC VGNAYGNTDR ITELAQILKE YREKTTESMP QMETRAKKTD AVFLVGDVHG  720
NVHS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	140	144	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-87	FAR1 family protein