PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019198284.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 199aa    MW: 22058.2 Da    PI: 9.6892
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019198284.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.48.8e-242070151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    +rie+++ r+vtfskRrn + KKA+E+S+LC++e++++ifss+gk y++s+
  XP_019198284.1 20 SRIESETSRSVTFSKRRNDLVKKANEISTLCGVEILLVIFSSSGKAYTFSN 70
                    59***********************************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    
MSSNNANRRV GRGRQRIPLS RIESETSRSV TFSKRRNDLV KKANEISTLC GVEILLVIFS  60
SSGKAYTFSN PGMDAILTKY FGANPTAQPN PAEQNLRAHR EALMQIMSSQ INYLEMQIEE  120
EMKVNQALRE AEKVNPPISE LPLSELPSMK HKMEILRSLV LQKLMQVPGQ AHLDTSSIFG  180
YSQFGAYDNV GPSGGASAQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-22M-type_MADS family protein