PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019198287.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 169aa    MW: 19024.1 Da    PI: 10.5455
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019198287.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF801.6e-252070151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    +rie+++ r+vtfskRrng++KKA+E+S+LC++e++++ifss+gk y++s+
  XP_019198287.1 20 SRIESETSRSVTFSKRRNGLIKKANEISTLCGVEILLVIFSSSGKAYTFSN 70
                    59***********************************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    
MSSNNANRRV GRGRQRIPLS RIESETSRSV TFSKRRNGLI KKANEISTLC GVEILLVIFS  60
SSGKAYTFSN PGMDAILTKY FGANPTAQPN PAKQNLRAYR EALMQIMSSQ INYLEMQIEE  120
EMKVNQALRE AEKVNPPISE LPLSEIPSMK HKMEILRSLV LQKLMQVPG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.16e-27M-type_MADS family protein