PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019198348.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

CO-like

Protein Properties

Length: 409aa MW: 44895.3 Da PI: 4.5091

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019198348.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.4	1.1e-06	46	90	4	42
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 +C+ ++++++ C + + lC++C e H + Ht++p+ XP_019198348.1 46 LVCESCNSQPAFARCIEESLSLCQNCDWEAHASsstsstHTRQPV 90 68*****************************77899999999885 PP
2	CCT	63	9e-22	352	395	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a+lRYkeK+ktRkFeK++rY+sRKa+A+ R RvKGrFvk+ XP_019198348.1 352 RSNAILRYKEKKKTRKFEKQVRYASRKARADVRRRVKGRFVKAG 395 899**************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MGYLCDFCGE QQSMVYCRSD AACLCFSCDC RVHSANALSQ RHSRTLVCES CNSQPAFARC 60 IEESLSLCQN CDWEAHASSS TSSTHTRQPV SHYLGCPSAA ELPSLWSFLL GIPLIGDSTC 120 ESGMSLMSLT NNDPRDIQGS EGKSAQDVST VVEGNESRSV DKSTICTESS KETPLNKLEN 180 VELLTESTNS TSKVCYSGTK GQTLYEDEPT YGDINMDELD LSFENYEQFT ASLNDDANEL 240 FKDEGIDGFF GTNNVPGADN DSQDANDVEG SSINWINTIQ PELSNAAFAD STTSKTESIN 300 CFARQDKYSL SFSNLSGESA GLQDCGLSSM FLVGEPPWGS SGPENLLPSS SRSNAILRYK 360 EKKKTRKFEK QVRYASRKAR ADVRRRVKGR FVKAGDAYDY DPKGQTRTY

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MGYLCDFCGE QQSMVYCRSD AACLCFSCDC RVHSANALSQ RHSRTLVCES CNSQPAFARC  60
IEESLSLCQN CDWEAHASSS TSSTHTRQPV SHYLGCPSAA ELPSLWSFLL GIPLIGDSTC  120
ESGMSLMSLT NNDPRDIQGS EGKSAQDVST VVEGNESRSV DKSTICTESS KETPLNKLEN  180
VELLTESTNS TSKVCYSGTK GQTLYEDEPT YGDINMDELD LSFENYEQFT ASLNDDANEL  240
FKDEGIDGFF GTNNVPGADN DSQDANDVEG SSINWINTIQ PELSNAAFAD STTSKTESIN  300
CFARQDKYSL SFSNLSGESA GLQDCGLSSM FLVGEPPWGS SGPENLLPSS SRSNAILRYK  360
EKKKTRKFEK QVRYASRKAR ADVRRRVKGR FVKAGDAYDY DPKGQTRTY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07650.2	3e-87	CO-like family protein