PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019198395.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 243aa    MW: 26764.4 Da    PI: 7.674
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019198395.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.41.3e-39911901100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+C++ Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++r d++ss+vy+A+ar+rdPvyG++g + +l++q++ ++aela
  XP_019198395.1  91 PCAACKILRRRCVERCVLAPYFPPTEPLKFTIAHRVFGASNIIKTLQELPEDRRADTVSSMVYKANARIRDPVYGCAGAVCQLEKQINAMRAELA 185
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_019198395.1 186 KAEAE 190
                     99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MTLDGASQSL CHQDFFSYPY IYIYIERERE ISVISPSLRH HPKRKIEEHY CNTDNNSNSG  60
TTTPSSTAAV GGGATFPTSS APPAAGVILS PCAACKILRR RCVERCVLAP YFPPTEPLKF  120
TIAHRVFGAS NIIKTLQELP EDRRADTVSS MVYKANARIR DPVYGCAGAV CQLEKQINAM  180
RAELAKAEAE MLNLQCQNAN LIAYVDWRLP PQHDDMSSHR NTAAFFSPED ANVCAARAGT  240
PQL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.15e-64LBD family protein