PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019198523.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NF-YB

Protein Properties

Length: 112aa MW: 12346.9 Da PI: 5.7751

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019198523.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	136.3	9.1e-43	20	111	1	92
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 vre++r lP+anvsrimkk+lP nakis +ak+ vqec++efisf+t+eas++ q ekrkt++gdd+l +l tlGfedy epl++yl+ky+e XP_019198523.1 20 VREHERSLPVANVSRIMKKALPPNAKISLEAKDFVQECATEFISFITNEASERGQIEKRKTLTGDDVLNSLDTLGFEDYGEPLRAYLMKYKE 111 5899**************************************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 112 aa Download sequence
MEGAPGGGGS HQSSQSKLAV REHERSLPVA NVSRIMKKAL PPNAKISLEA KDFVQECATE 60 FISFITNEAS ERGQIEKRKT LTGDDVLNSL DTLGFEDYGE PLRAYLMKYK ES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38880.6	1e-43	NF-YB family protein