PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019198585.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NF-YC

Protein Properties

Length: 238aa MW: 25819.1 Da PI: 4.848

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019198585.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	179.1	4e-56	40	144	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdfl XP_019198585.1 40 QLQMFWTYQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFL 134 89***998899****************************************************************************** PP NF-YC 93 vdivprdelk 102 vdivprde+k XP_019198585.1 135 VDIVPRDEIK 144 *****975 PP

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence
MENSPQQAAA AAAAAAAQTA GGYPPAQPPY HHLLQQQQQQ LQMFWTYQRQ EIEQVNDFKN 60 HQLPLARIKK IMKADEDVRM ISAEAPILFA KACELFILEL TIRSWLHAEE NKRRTLQKND 120 IAAAITRTDI FDFLVDIVPR DEIKDETAAL VGPAAAAAAG MVAGSTASGV PYYYPPMGQP 180 TPPGVMIGRP AVPGVDPSMY VQPPPPPSQA WQSVWQPQED NSYASGGSSG QGNLDGQG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	119	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	1e-81	NF-YC family protein