PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019199015.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 187aa    MW: 20834.9 Da    PI: 9.799
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019199015.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.69.7e-1864153299
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     +k +++s+++   +l lpk+f ++h  +   +  ++l de+g+++e ++  ++    + l++GW++F ++++L +gD++vF+l++   f+l+v +
  XP_019199015.1  64 VKFMLHSHTTGGFWLGLPKDFSTSHLPN--HNAAIILVDENGKEMETRYLAER----HGLSGGWRGFSQEHNLIAGDVLVFQLIE--PFKLKVYI 150
                     5889999******************533..4558***************4344....55***********************985..9999**99 PP

                     E-S CS
              B3  97 frk 99 
                     +r+
  XP_019199015.1 151 VRA 153
                     987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    
MFKKMSSLAA NKKVIKRRSP TPKMVQAKGE GSRRLYDSVD ENSLAMRRAR ELQANLSPQF  60
PSVVKFMLHS HTTGGFWLGL PKDFSTSHLP NHNAAIILVD ENGKEMETRY LAERHGLSGG  120
WRGFSQEHNL IAGDVLVFQL IEPFKLKVYI VRANDSTNIA CAISLLNFSH SAQPIASEGL  180
LQEGDDI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.11e-40B3 family protein