PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019199016.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 399aa MW: 44333 Da PI: 7.9563

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019199016.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47	5.8e-15	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+d + + G+g +W + +++ g++R++k+c++rw++yl XP_019199016.1 14 KGPWSPEEDAKLKDFIDKNGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	39.9	9.6e-13	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + + G++ W+ Ia+ ++ gRt++++k++w++ XP_019199016.1 69 GEFSEEEDRIICSLYATIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 789****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence
MGRAPCCDKS KVKKGPWSPE EDAKLKDFID KNGTGGNWIA LPQKAGLKRC GKSCRLRWLN 60 YLRPNIKHGE FSEEEDRIIC SLYATIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMAM 120 MLLPPSSSSS SSSSKHRSII SSSSMSPLFS AAPTGPSVLL PTPPQQQQFS FYTPHRSFSG 180 LESPSQLHHP DFGSSPYSSF NFQMSHQDQQ ASLLNPALMQ QYHHHHHPAA MNKGNHHNLL 240 MFGGSDQVSG SSSSDGSCSQ ISYERSKITD HNVKQEPADL GKYSFQGDPH HQIISSTNAG 300 FEDTNNQIQG HMFFLDYGNG PPQVANNSTV AATAAATTQQ LQYDLEVVRE LVSSSSSNGH 360 GHDNLNNINN NNNNNNNNND FLLFNYENKT DDQKGMYFY

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence

MGRAPCCDKS KVKKGPWSPE EDAKLKDFID KNGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSEEEDRIIC SLYATIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMAM  120
MLLPPSSSSS SSSSKHRSII SSSSMSPLFS AAPTGPSVLL PTPPQQQQFS FYTPHRSFSG  180
LESPSQLHHP DFGSSPYSSF NFQMSHQDQQ ASLLNPALMQ QYHHHHHPAA MNKGNHHNLL  240
MFGGSDQVSG SSSSDGSCSQ ISYERSKITD HNVKQEPADL GKYSFQGDPH HQIISSTNAG  300
FEDTNNQIQG HMFFLDYGNG PPQVANNSTV AATAAATTQQ LQYDLEVVRE LVSSSSSNGH  360
GHDNLNNINN NNNNNNNNND FLLFNYENKT DDQKGMYFY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	9e-74	MYB family protein