PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019199065.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Protein Properties

Length: 398aa MW: 44401.3 Da PI: 5.0752

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019199065.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.3	4.2e-16	60	149	2	99
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 +k l++s++ + +l lpk+f+++h + ++ ++l de+gr+ e k+ ++k++ l++GW++F +++L gD+vvF+l++ +l+v + XP_019199065.1 60 VKFLLHSHTARGFWLGLPKDFCTSHLPN--HDTAIILVDENGRETESKYLIEKHG----LSGGWRGFSLQHNLVPGDVVVFQLIQ--PLKLKVYI 146 588999*****************533..5568***********777777....*********************997..77778988 PP E-S CS B3 97 frk 99 +r+ XP_019199065.1 147 VRA 149 876 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence
MNPLAANKKV IRRRSPTPKK VQAKGEGSRR EYGCVDENSI AMRRARELQA NLSPQFPSVV 60 KFLLHSHTAR GFWLGLPKDF CTSHLPNHDT AIILVDENGR ETESKYLIEK HGLSGGWRGF 120 SLQHNLVPGD VVVFQLIQPL KLKVYIVRAN DSANIAGAIS LLDLSPYAHP IETEGLLLEG 180 DDIEENVLRI EDAPDQLTRI EHEGENLERE VSTSDHLSAE NVVEFSQVKN FEDFKVVVNN 240 INIDSKISED TRLKYYELCR SQNAYLHELE EPGLNYTLIA GAITETVKIA DGIKAATLAT 300 GRDVLEVWDT TLIGVGNFGM EVGFLRGRIS ELIRMCEAAE IVAGKEKEKA IAEAEMKDLL 360 YKVSKVSAAI KNLDEEIQAH SGEERVEEVF KNVASANW

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence

MNPLAANKKV IRRRSPTPKK VQAKGEGSRR EYGCVDENSI AMRRARELQA NLSPQFPSVV  60
KFLLHSHTAR GFWLGLPKDF CTSHLPNHDT AIILVDENGR ETESKYLIEK HGLSGGWRGF  120
SLQHNLVPGD VVVFQLIQPL KLKVYIVRAN DSANIAGAIS LLDLSPYAHP IETEGLLLEG  180
DDIEENVLRI EDAPDQLTRI EHEGENLERE VSTSDHLSAE NVVEFSQVKN FEDFKVVVNN  240
INIDSKISED TRLKYYELCR SQNAYLHELE EPGLNYTLIA GAITETVKIA DGIKAATLAT  300
GRDVLEVWDT TLIGVGNFGM EVGFLRGRIS ELIRMCEAAE IVAGKEKEKA IAEAEMKDLL  360
YKVSKVSAAI KNLDEEIQAH SGEERVEEVF KNVASANW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-39	B3 family protein