PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019199069.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 223aa    MW: 24452.2 Da    PI: 5.3219
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019199069.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.85.4e-2171157290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      Yn+YA++vGFsvrk +++ +  ++++ ++ f+Csk g++ + +     +  ++  tr gC+a+++    +dg w vtk ++ HnHel+
  XP_019199069.1  71 LYNNYAYRVGFSVRKGNQRCKVYSKTVQMKMFMCSKAGFKVKANAG--VRAYSKIDTRSGCDACVQFDVGEDGLWTVTKHVKVHNHELC 157
                     7***************************************998877..888899**********************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MDDAVDQRDE ALDQRDEAGD ELHTVPVSDD VVVDSPSSDP IELDIDGSSS NPVDEDLVGV  60
VVSNGVEAYE LYNNYAYRVG FSVRKGNQRC KVYSKTVQMK MFMCSKAGFK VKANAGVRAY  120
SKIDTRSGCD ACVQFDVGED GLWTVTKHVK VHNHELCAVD KSHLLRSHRN VGDNQLLYLK  180
DLKKSGVAMA DGIRFLKHQA GGSPLVGFTN RDAYNSIASD TSN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-17FAR1 family protein