PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019199133.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WOX
Protein Properties Length: 238aa    MW: 26266.2 Da    PI: 7.6583
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019199133.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.14.2e-201170357
                    --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    +R+++tkeq++ Le+l+++  r+p+ae++++++  l    +++ ++V++WFqN++a++++
  XP_019199133.1 11 SRWNPTKEQINLLESLYNQgIRTPTAEQIQQITGMLrafgHIEGKNVFYWFQNHKARQRQ 70
                    7*****************99**************************************97 PP
2Wus_type_Homeobox114.16.8e-371072365
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                        +RW+Pt+eQi++Le+ly++G+rtP++e+iq+it +L+++G+ie+kNVfyWFQN+kaR+rqkq
     XP_019199133.1 10 GSRWNPTKEQINLLESLYNQGIRTPTAEQIQQITGMLRAFGHIEGKNVFYWFQNHKARQRQKQ 72
                       68***********************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MEDVNTASNG SRWNPTKEQI NLLESLYNQG IRTPTAEQIQ QITGMLRAFG HIEGKNVFYW  60
FQNHKARQRQ KQKQENLAFF NHFHYPYPHP HHLYLQHCPN VIYRPYYVPP QGDLGFYAKS  120
PGLFLSAGST TGYKRNAPKM DIMHKPSPPT STGYNEEETN TAKAKCSPET LDLFPLLPTG  180
ILQASSKSVN GVSGDAPSSG AVEINCCGDE HRGGGGGGSA GDHPFFDFFC GNGGYGAH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.19e-38WOX family protein