PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019199174.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 217aa    MW: 23632.8 Da    PI: 6.702
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019199174.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260133.39.5e-42351341100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+Ca++Cvlapyfp ++p kf  +h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+a+la
  XP_019199174.1  35 PCAACKILRRRCAEKCVLAPYFPPTDPLKFTTAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARLRDPVYGSAGAICHLQKQVSELQAQLA 129
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_019199174.1 130 QTQAE 134
                     99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    
MESSCETTVT PPSSRSVSPS SSSSPPPPPS LVVSPCAACK ILRRRCAEKC VLAPYFPPTD  60
PLKFTTAHRV FGASNIIKFL QELPESQRAD AVSSMVYEAN ARLRDPVYGS AGAICHLQKQ  120
VSELQAQLAQ TQAELLNMQF QLQAQVANHL MARVCMEMPP PPPLPLHHQS GFDSFGAVTA  180
ATETAQHHGL LSTLSSLDDN NNNFGHSFSW ELQTMWT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.17e-57LBD family protein