PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019199217.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 629aa    MW: 70855.5 Da    PI: 6.629
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019199217.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3596.7e-1102576263374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                      lL++cA+a++s d++ +++lL+++++++sp+g+  +R+a+y+++AL+arl+++++ ly + +ps+ s    ++ l+a++++  +sP+ k+s++ 
  XP_019199217.1 257 GLLTQCAQAMASYDTRTVTQLLKKIRDHSSPQGNGHERMAFYLANALEARLNGTGTALYISNSPSNIS---AADILKAYQMYITASPFKKVSNMF 348
                     58***************************************************999999877777777...9*********************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     aN+ I + ++g+ r+HiiDf+i +G+QWp+L+q L++Rp+gpp+lRiTg++ p++g   ++++++tg+rL +++++++vpfef++ +a+++++++
  XP_019199217.1 349 ANRYIRKVAAGAPRLHIIDFGILYGFQWPCLIQGLSTRPGGPPRLRITGIDFPQPGfrPADRVKATGRRLDNYCKRFKVPFEFKA-IAQKWDTIK 442
                     *******************************************************9*****************************.7******** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     le+L+++++++l+Vn+  +l +++de+v  +s+rd vL+l+++++P+v+++   +  +n++ F++rf eal ++s+lfd +ea++pre+++r+  
  XP_019199217.1 443 LEDLEIDRDDVLVVNCLDRLGNVPDETVVPDSPRDIVLDLIRKINPDVFIHGVVNGTYNTPFFVTRFREALFHFSSLFDIFEATVPREDKDRQLF 537
                     *********************************************************************************************** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     E++l gr++ nv+aceg+er+er et+++W+ r  +aGF+++pl++++++ +k  ++  + + ++++e+ ++l++gWk+r L +vS+W+
  XP_019199217.1 538 EEMLYGRDALNVIACEGSERVERPETYKQWQVRSLRAGFRQLPLDQEITNCVKDKVKSEYHKDFSIDEDGKWLLQGWKGRVLHAVSCWK 626
                     *********************************************************999888*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    
MEALVQELFT TQNDFVYNHH SKPVNQGKQR FNLVERSAGE GEEGPEGDYS DAILKYINQM  60
LMEEEDLENQ PCMFRDCMAL HATEKYFSDV LNGSSGENSH VSITPSFAGS SPSTCSSDLN  120
NGDSDLSPQF QSSSNGFPDS LFSHYASTGA AIGLPNDSNI LNLSEGENSP SKGKRNHYYY  180
SSSDNGSAET QRSNKHLASY APADEPEPLE MYDDVLLCSK KKNSKTELQQ RGQSKGGGRN  240
RRGKKKESQK EFVDLSGLLT QCAQAMASYD TRTVTQLLKK IRDHSSPQGN GHERMAFYLA  300
NALEARLNGT GTALYISNSP SNISAADILK AYQMYITASP FKKVSNMFAN RYIRKVAAGA  360
PRLHIIDFGI LYGFQWPCLI QGLSTRPGGP PRLRITGIDF PQPGFRPADR VKATGRRLDN  420
YCKRFKVPFE FKAIAQKWDT IKLEDLEIDR DDVLVVNCLD RLGNVPDETV VPDSPRDIVL  480
DLIRKINPDV FIHGVVNGTY NTPFFVTRFR EALFHFSSLF DIFEATVPRE DKDRQLFEEM  540
LYGRDALNVI ACEGSERVER PETYKQWQVR SLRAGFRQLP LDQEITNCVK DKVKSEYHKD  600
FSIDEDGKWL LQGWKGRVLH AVSCWKPIN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-166GRAS family protein